SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,52058,_gap_,57196,57196,57184,49899,57196,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Mus_musculus_76_38   (House mouse)   0
Xenopus_laevis_   (African clawed frog)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   0
Mus_musculus_69_38   (House mouse)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 49
NCBI_2017_08_genome 0

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