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  Home > SCOP hierarchy > Domain combination - _gap_,52172,47384,55874

Domain combinations for _gap_,52172,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52172 - CheY-like
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Pseudanabaena_sp._PCC_7367 3
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 1
Calothrix_sp._PCC_7507 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Cellulomonas_flavigena_DSM_20109 1
Deinococcus_deserti_VCD115 1
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_radiodurans_R1 1
Paenibacillus_mucilaginosus_3016 1
Niastella_koreensis_GR20-10 0
Flexibacter_litoralis_DSM_6794 0
Spirosoma_linguale_DSM_74 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 2
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Treponema_primitia_ZAS-2 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Candidatus_Koribacter_versatilis_Ellin345 1
Sulfuricurvum_kujiense_DSM_16994 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfatibacillum_alkenivorans_AK-01 1
Desulfobacterium_autotrophicum_HRM2 1
Geobacter_sp._M21 1
Geobacter_lovleyi_SZ 2
Geobacter_bemidjiensis_Bem 1
Pelobacter_propionicus_DSM_2379 1
Haliangium_ochraceum_DSM_14365 2
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._KH32C 0
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 3
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Herminiimonas_arsenicoxydans 0
Herbaspirillum_seropedicae_SmR1 1
Achromobacter_xylosoxidans 1
Magnetococcus_marinus_MC-1 1
Asticcacaulis_excentricus_CB_48 1
Hirschia_baltica_ATCC_49814 1
Rhodospirillum_photometricum_DSM_122 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 1
Methylobacterium_sp._4-46 0
Hyphomicrobium_sp._MC1 0
Hyphomicrobium_denitrificans_ATCC_51888 0
Hahella_chejuensis_KCTC_2396 0
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Stenotrophomonas_maltophilia_K279a 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Pseudomonas_sp._TKP 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_stutzeri_A1501 0
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Methanospirillum_hungatei_JF-1 1
Halorhabdus_utahensis_DSM_12940 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._ATCC_51142 1
Stanieria_cyanosphaera_PCC_7437 1
Deinococcus_peraridilitoris_DSM_19664 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Geobacter_sp._M18 1
Myxococcus_stipitatus_DSM_14675 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Rhodospirillum_rubrum_ATCC_11170 1
Hyphomicrobium_denitrificans_1NES1 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_protegens_CHA0 2
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_Pf0-1 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
STRING_v9.0.5_(STRING) 53
Uniprot_2018_03_genome 10960
NCBI_2017_08_genome 1678
TargetDB__(Targets) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.