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  Home > SCOP hierarchy > Domain combination - _gap_,52172,55785,47384,55874

Domain combinations for _gap_,52172,55785,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52172 - CheY-like
55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 0
Microbotryum_violaceum_22 0
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Punctularia_strigosozonata_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 0
Microcoleus_sp._PCC_7113 3
Geitlerinema_sp._PCC_7407 1
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 1
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7107 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Clostridium_beijerinckii_NCIMB_8052 1
Fibrella_aestuarina 2
Spirosoma_linguale_DSM_74 1
Rhodopirellula_baltica_SH_1 1
Opitutus_terrae_PB90-1 0
Candidatus_Solibacter_usitatus_Ellin6076 2
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 1
Acidobacterium_capsulatum_ATCC_51196 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfobacterium_autotrophicum_HRM2 1
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 1
Geobacter_sulfurreducens_KN400 1
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 3
Corallococcus_coralloides_DSM_2259 3
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 2
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Rubrivivax_gelatinosus_IL144 0
Burkholderia_rhizoxinica_HKI_454 0
Cupriavidus_taiwanensis_LMG_19424 0
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 0
Polaromonas_sp._JS666 2
Polaromonas_naphthalenivorans_CJ2 1
Magnetococcus_marinus_MC-1 0
Caulobacter_sp._K31 0
Phenylobacterium_zucineum_HLK1 0
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 0
Gluconobacter_oxydans_621H 0
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_extorquens_AM1 0
Methylobacterium_sp._4-46 0
Methylobacterium_nodulans_ORS_2060 0
Methylobacterium_radiotolerans_JCM_2831 0
Pseudoalteromonas_sp._SM9913 1
Hahella_chejuensis_KCTC_2396 1
Allochromatium_vinosum_DSM_180 0
Halogeometricum_borinquense_DSM_11551 1

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Strains
Genome     Number
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 0
Cyanothece_sp._PCC_7425 0
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Deinococcus_peraridilitoris_DSM_19664 1
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 1
Methylobacterium_extorquens_DM4 0
Methylobacterium_extorquens_PA1 0
Natronomonas_moolapensis_8.8.11 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
Uniprot_2018_03_genome 6150
NCBI_2017_08_genome 451
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 25

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.