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  Home > SCOP hierarchy > Domain combination - _gap_,52540,52980,47781

Domain combinations for _gap_,52540,52980,47781 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
52980 - Restriction endonuclease-like
47781 - RuvA domain 2-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Onchocerca_volvulus_22 0
Candida_glabrata_CBS138 1
Nanoarchaeum_equitans_Kin4-M 1
halophilic_archaeon_DL31 1
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Methanopyrus_kandleri_AV19 1
Ferroglobus_placidus_DSM_10642 1
Archaeoglobus_profundus_DSM_5631 1
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Thermococcus_sp._4557 1
Thermococcus_onnurineus_NA1 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1
Thermococcus_sibiricus_MM_739 1
Thermococcus_barophilus_MP 1
Pyrococcus_sp._ST04 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_horikoshii_OT3 1
Pyrococcus_abyssi_GE5 1
Pyrococcus_furiosus_COM1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Halogeometricum_borinquense_DSM_11551 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 1
Halalkalicoccus_jeotgali_B3 1
Halobacterium_salinarum_R1 1
Halobacterium_sp._NRC-1 1
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 1
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 1

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Strains
Genome     Number
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Thermococcus_sp._AM4 1
Thermococcus_sp._CL1 1
Thermococcus_litoralis_DSM_5473 1
Pyrococcus_sp._NA2 1
Pyrococcus_furiosus_DSM_3638 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Others
Genome     Number
TargetDB__(Targets) 5
STRING_v9.0.5_(STRING) 37
NCBI_2017_08_genome 368
Uniprot_2018_03_genome 4950

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.