SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,52540,_gap_,103657,_gap_,50729,50729,50729,50729,_gap_,47031,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
103657 - BAR/IMD domain-like
50729 - PH domain-like
50729 - PH domain-like
50729 - PH domain-like
50729 - PH domain-like
47031 - Second domain of FERM

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1

Longest transcript per gene
Genome     Number
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1

Others
Genome     Number
Uniprot_2018_03_genome 204
NCBI_2017_08_genome 12
STRING_v9.0.5_(STRING) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]