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Domain combinations for _gap_,52540,_gap_,52540,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Felis_catus_76_6.2   (Domestic cat)   1
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 2
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Drosophila_suzukii 0
Rhodnius_prolixus_22 1
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Rhizomucor_miehei_CAU432_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Schizosaccharomyces_cryophilus_OY26_22 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   0
Linum_usitatissimum_v200   (Flax)   0
Vitis_vinifera_   (Wine grape)   0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 5
Musa_acuminata_22   (Wild Malaysian banana)   0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Thecamonas_trahens_ATCC_50062_ 0
Giardia_lamblia_2.3 0
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 1
Ichthyophthirius_multifiliis_strain_G5_ 1
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 0
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Taylorella_asinigenitalis_MCE3 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 1
Burkholderia_sp._YI23 0

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Bos_taurus_69_3.1   (Cattle)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Felis_catus_69   (Domestic cat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Uniprot_2018_03_genome 2505
NCBI_2017_08_genome 118
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 11

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.