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  Home > SCOP hierarchy > Domain combination - _gap_,52833,_gap_

Domain combinations for _gap_,52833,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52833 - Thioredoxin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   15
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   5
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   7
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   7
Felis_catus_76_6.2   (Domestic cat)   6
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Saccoglossus_kowalevskii_v3.0 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   6
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_76_2.0   (Green anole)   5
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   4
Gadus_morhua_76_1   (Atlantic cod)   6
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5
Takifugu_rubripes_76_4   (Torafugu)   9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   11
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4
Adineta_vaga 10
Octopus_bimaculoides_280 6
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 3
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 4
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 5
Drosophila_suzukii 5
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 5
Drosophila_sechellia_1.3 5
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 4
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 5
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 9
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   5
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 6
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 5
Sphaeroforma_arctica_JP610_ 4
Capsaspora_owczarzaki_ATCC_30864_ 7
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 4
Mucor_circinelloides_ 4
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 6
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 7
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 5
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 7
Piloderma_croceum_F_1598_v1.0 5
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   5
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 5
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 4
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 3
Trametes_versicolor_v1.0 2
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 5
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 5
Neurospora_discreta_FGSC_8579_ 5
Neurospora_crassa_OR74A_ 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 5
Verticillium_dahliae_VdLs.17_ 4
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 5
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 6
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6
Cochliobolus_victoriae_FI3_v1.0 5
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 5
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 5
Penicillium_chrysogenum_v1.0 5
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 2
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 2
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 8
Pinus_taeda   (Loblolly pine)   15
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   22
Theobroma_cacao_B97-61/B2_v1   (Cacao)   14
Gossypium_raimondii_v221 51
Citrus_clementina_v165 14
Citrus_sinensis_v154   (Sweet orange)   15
Thellungiella_halophila_v173 20
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   28
Capsella_rubella_v183 18
Arabidopsis_lyrata_   (Lyrate rockcress)   17
Arabidopsis_thaliana_10   (Thale cress)   17
Carica_papaya_   (Papaya)   7
Medicago_truncatula_   (Barrel medic)   22
Phaseolus_vulgaris_v186   (French bean)   17
Glycine_max_v109   (Soybean)   37
Cucumis_sativus_v122   (Cucumber)   18
Fragaria_vesca_   (Wild strawberry)   19
Malus_domestica_v196   (Apple)   49
Prunus_persica_v139   (Peach)   13
Linum_usitatissimum_v200   (Flax)   28
Manihot_esculenta_v147   (Cassava)   13
Populus_trichocarpa_v156   (Black cottonwood)   21
Vitis_vinifera_   (Wine grape)   12
Mimulus_guttatus_v140   (Spotted monkey flower)   16
Solanum_lycopersicum_v.2.3   (Tomato)   11
Solanum_tuberosum_   (Potato)   17
Actinidia_chinensis_Hongyang_ 19
Aquilegia_coerulea_v195 21
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   20
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   26
Oryza_barthii_22   (African wild rice)   11
Oryza_meridionalis_22 21
Oryza_glumaepatula_22 21
Oryza_glaberrima   (African rice)   11
Oryza_punctata_22 16
Oryza_nivara_22 22
Oryza_brachyantha_22   (Malo sina)   10
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16
Oryza_sativa_v193   (Rice)   15
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   22
Zea_mays_subsp._mays_   (Maize)   35
Zea_mays_v181   (Maize)   38
Sorghum_bicolor_   (Sorghum)   26
Musa_balbisiana   (Balbis banana)   20
Musa_acuminata_22   (Wild Malaysian banana)   18
Amborella_trichopoda_22 12
Physcomitrella_patens 10
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 7
Volvox_carteri_v199 10
Chlamydomonas_reinhardtii_4.0 10
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 6
Bathycoccus_prasinos_ 12
Micromonas_sp._RCC299_ 7
Micromonas_pusilla_CCMP1545_v3.0 15
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 3
Porphyridium_purpureum_02_2012 6
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 23
Giardia_lamblia_2.3 3
Cyanophora_paradoxa_ 5
Leishmania_mexicana_2.4 8
Leishmania_major_strain_Friedlin_ 7
Leishmania_infantum_JPCM5_2.4 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 9
Trypanosoma_vivax_ 7
Trypanosoma_cruzi_strain_CL_Brener 8
Trypanosoma_congolense_2.4 7
Trypanosoma_brucei_gambiense_v4.1 6
Trypanosoma_brucei_TREU927_v4.1 6
Ectocarpus_siliculosus 20
Aureococcus_anophagefferens_ 7
Albugo_laibachii_22 10
Pythium_iwayamai_DAOM_BR242034_22 7
Pythium_arrhenomanes_ATCC_12531_22 8
Pythium_ultimum_v1.7-2 14
Pythium_aphanidermatum_DAOM_BR444_22 10
Pythium_irregulare_DAOM_BR486_22 12
Pythium_vexans_DAOM_BR484_22 11
Phytophthora_ramorum_1.1   (Sudden oak death agent)   12
Phytophthora_sojae_1.1 11
Phytophthora_infestans_T30-4_ 10
Phytophthora_capsici_ 8
Hyaloperonospora_arabidopsidis_22 7
Phaeodactylum_tricornutumCCAP_1055/1 12
Fragilariopsis_cylindrus 22
Thalassiosira_pseudonana_CCMP1335 15
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 13
Tetrahymena_thermophila_SB210_1_ 5
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 3
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 8
Toxoplasma_gondii_VEG 9
Toxoplasma_gondii_ME49 9
Toxoplasma_gondii_GT1 9
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 5
Plasmodium_knowlesi_strain_H_ 6
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 4
Symbiodinium_minutum_clade_B1_v1.2 14
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 7
Guillardia_theta_CCMP2712_v1.0_ 11
Emiliania_huxleyi_CCMP1516_ 20
Thermobaculum_terrenum_ATCC_BAA-798 1
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 3
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 5
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 3
Anabaena_variabilis_ATCC_29413 3
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 2
Nostoc_sp._PCC_7120 8
Nostoc_sp._PCC_7524 3
Anabaena_sp._90 1
Conexibacter_woesei_DSM_14684 1
Slackia_heliotrinireducens_DSM_20476 1
Rubrobacter_xylanophilus_DSM_9941 0
Acidimicrobium_ferrooxidans_DSM_10331 1
Nakamurella_multipartita_DSM_44233 1
Acidothermus_cellulolyticus_11B 2
Modestobacter_marinus 2
Blastococcus_saxobsidens_DD2 2
Geodermatophilus_obscurus_DSM_43160 3
Kineococcus_radiotolerans_SRS30216 3
Catenulispora_acidiphila_DSM_44928 5
Frankia_sp._EAN1pec 3
Frankia_alni_ACN14a 2
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 3
Streptomyces_coelicolor_A3(2) 3
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_sp._SirexAA-E 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 3
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 3
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 5
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 3
Pseudonocardia_dioxanivorans_CB1190 2
Saccharopolyspora_erythraea_NRRL_2338 4
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 4
Nocardioides_sp._JS614 4
Propionibacterium_propionicum_F0230a 1
Propionibacterium_acnes_SK137 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Segniliparus_rotundus_DSM_44985 3
Tsukamurella_paurometabola_DSM_20162 2
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 2
Rhodococcus_jostii_RHA1 3
Rhodococcus_equi_103S 2
Rhodococcus_opacus_B4 3
Rhodococcus_erythropolis_PR4 2
Nocardia_farcinica_IFM_10152 2
Amycolicicoccus_subflavus_DQS3-9A1 2
Mycobacterium_massiliense_str._GO_06 1
Mycobacterium_abscessus_ATCC_19977 2
Mycobacterium_sp._JLS 2
Mycobacterium_intracellulare_ATCC_13950 2
Mycobacterium_avium_104 2
Mycobacterium_vanbaalenii_PYR-1 3
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 2
Mycobacterium_tuberculosis_KZN_1435 2
Mycobacterium_tuberculosis 2
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 2
Mycobacterium_rhodesiae_NBB3 5
Mycobacterium_ulcerans_Agy99 3
Mycobacterium_gilvum_PYR-GCK 2
Mycobacterium_chubuense_NBB4 5
Mycobacterium_marinum_M 2
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_resistens_DSM_45100 3
Corynebacterium_aurimucosum_ATCC_700975 2
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_efficiens_YS-314 3
Corynebacterium_ulcerans_0102 2
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 3
Corynebacterium_variabile_DSM_44702 2
Corynebacterium_pseudotuberculosis_316 2
Corynebacterium_glutamicum_R 2
Corynebacterium_diphtheriae_NCTC_13129 3
Sanguibacter_keddieii_DSM_10542 2
Kytococcus_sedentarius_DSM_20547 1
Beutenbergia_cavernae_DSM_12333 2
Leifsonia_xyli_subsp._xyli_str._CTCB07 1
Microbacterium_testaceum_StLB037 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 3
Isoptericola_variabilis_225 1
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_flavigena_DSM_20109 4
Cellulomonas_fimi_ATCC_484 2
[Cellvibrio]_gilvus_ATCC_13127 3
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 1
Rothia_mucilaginosa_DY-18 2
Rothia_dentocariosa_ATCC_17931 1
Arthrobacter_sp._Rue61a 1
Renibacterium_salmoninarum_ATCC_33209 1
Gardnerella_vaginalis_409-05 2
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1
Bifidobacterium_dentium_Bd1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Bifidobacterium_bifidum_S17 1
Bifidobacterium_adolescentis_ATCC_15703 1
Mobiluncus_curtisii_ATCC_43063 1
Actinomyces_sp._F0330 4
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 2
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 2
Deinococcus_proteolyticus_MRP 4
Deinococcus_radiodurans_R1 2
Meiothermus_silvanus_DSM_9946 1
Symbiobacterium_thermophilum_IAM_14863 2
Clostridium_cellulolyticum_H10 1
Ethanoligenens_harbinense_YUAN-3 1
Thermaerobacter_marianensis_DSM_12885 1
Dehalobacter_sp._DCA 1
Desulfotomaculum_reducens_MI-1 2
Desulfotomaculum_kuznetsovii_DSM_6115 2
Clostridium_phytofermentans_ISDg 1
Lactobacillus_salivarius_CECT_5713 1
Lactobacillus_acidophilus_30SC 1
Streptococcus_intermedius_JTH08 1
Streptococcus_gallolyticus_UCN34 1
Streptococcus_pseudopneumoniae_IS7493 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1
Streptococcus_mutans_NN2025 1
Streptococcus_sanguinis_SK36 1
Streptococcus_salivarius_57.I 1
Paenibacillus_sp._JDR-2 1
Bacillus_selenitireducens_MLS10 1
Solibacillus_silvestris_StLB046 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Oceanobacillus_iheyensis_HTE831 1
Geobacillus_thermoleovorans_CCB_US3_UF5 2
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._1NLA3E 1
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_pseudofirmus_OF4 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_pumilus_SAFR-032 2
Bacillus_coagulans_2-6 1
Candidatus_Cloacamonas_acidaminovorans 2
Gemmatimonas_aurantiaca_T-27 2
Melioribacter_roseus_P3M 1
Ignavibacterium_album_JCM_16511 3
Chloroherpeton_thalassium_ATCC_35110 1
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 3
Salinibacter_ruber_M8 2
Rhodothermus_marinus_DSM_4252 1
Flexibacter_litoralis_DSM_6794 1
Belliella_baltica_DSM_15883 1
Fibrella_aestuarina 2
Dyadobacter_fermentans_DSM_18053 2
Cytophaga_hutchinsonii_ATCC_33406 2
Runella_slithyformis_DSM_19594 2
Parabacteroides_distasonis_ATCC_8503 1
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 0
Bacteroides_sp._CF50 0
Prevotella_melaninogenica_ATCC_25845 2
Prevotella_intermedia_17 2
Prevotella_denticola_F0289 3
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 2
Alistipes_finegoldii_DSM_17242 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 2
Pedobacter_heparinus_DSM_2366 2
Sphingobacterium_sp._21 4
Fluviicola_taffensis_DSM_16823 1
Zunongwangia_profunda_SM-A87 2
Aequorivita_sublithincola_DSM_14238 2
Zobellia_galactanivorans 1
Weeksella_virosa_DSM_16922 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Chlamydophila_pecorum_E58 1
Chlamydia_muridarum_Nigg 1
Chlamydophila_pneumoniae_TW-183 1
Chlamydophila_caviae_GPIC 1
Chlamydophila_abortus_S26/3 1
Chlamydia_trachomatis_B/Jali20/OT 1
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 5
Planctomyces_brasiliensis_DSM_5305 3
Planctomyces_limnophilus_DSM_3776 4
Rhodopirellula_baltica_SH_1 2
Pirellula_staleyi_DSM_6068 1
Methylacidiphilum_infernorum_V4 2
Opitutus_terrae_PB90-1 3
Akkermansia_muciniphila_ATCC_BAA-835 2
Turneriella_parva_DSM_21527 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Sphaerochaeta_globus_str._Buddy 1
Desulfurispirillum_indicum_S5 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Denitrovibrio_acetiphilus_DSM_12809 1
Thermocrinis_albus_DSM_14484 1
Aquifex_aeolicus_VF5 1
Hydrogenobacter_thermophilus_TK-6 3
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 2
Granulicella_tundricola_MP5ACTX9 5
Granulicella_mallensis_MP5ACTX8 4
Candidatus_Koribacter_versatilis_Ellin345 4
Terriglobus_saanensis_SP1PR4 4
Terriglobus_roseus_DSM_18391 3
Acidobacterium_capsulatum_ATCC_51196 1
Candidatus_Methylomirabilis_oxyfera 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1
Candidatus_Saccharimonas_aalborgensis 1
Acidithiobacillus_ferrivorans_SS3 2
Acidithiobacillus_caldus_SM-1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Desulfomonile_tiedjei_DSM_6799 2
Desulfobulbus_propionicus_DSM_2032 1
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_piezophilus 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 2
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 2
Geobacter_bemidjiensis_Bem 2
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 1
Pelobacter_carbinolicus_DSM_2380 1
Haliangium_ochraceum_DSM_14365 7
Sorangium_cellulosum_'So_ce_56' 8
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 2
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 2
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 2
Thauera_sp._MZ1T 1
Aromatoleum_aromaticum_EbN1 1
Pseudogulbenkiania_sp._NH8B 2
Laribacter_hongkongensis_HLHK9 1
Chromobacterium_violaceum_ATCC_12472 1
Neisseria_meningitidis_alpha14 1
Neisseria_meningitidis_FAM18 1
Neisseria_lactamica_020-06 1
Neisseria_gonorrhoeae_NCCP11945 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2
Methylibium_petroleiphilum_PM1 1
Thiomonas_arsenitoxydans 1
Leptothrix_cholodnii_SP-6 0
Burkholderia_phytofirmans_PsJN 4
Burkholderia_phymatum_STM815 5
Burkholderia_xenovorans_LB400 4
Ralstonia_eutropha_JMP134 3
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 4
Cupriavidus_necator_N-1 6
Ralstonia_eutropha_H16 4
Ralstonia_pickettii_12D 2
Ralstonia_solanacearum_CFBP2957 3
Burkholderia_sp._RPE64 3
Burkholderia_sp._CCGE1002 3
Burkholderia_thailandensis_E264 3
Burkholderia_pseudomallei_1106a 2
Burkholderia_mallei_SAVP1 2
Burkholderia_ambifaria_AMMD 3
Burkholderia_cenocepacia_HI2424 3
Burkholderia_multivorans_ATCC_17616 4
Burkholderia_vietnamiensis_G4 3
Burkholderia_gladioli_BSR3 4
Burkholderia_glumae_BGR1 1
Alicycliphilus_denitrificans_K601 3
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 2
Polaromonas_sp._JS666 3
Polaromonas_naphthalenivorans_CJ2 1
Variovorax_paradoxus_S110 4
Acidovorax_sp._JS42 3
Comamonas_testosteroni_CNB-2 1
Herminiimonas_arsenicoxydans 1
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Advenella_kashmirensis_WT001 2
Bordetella_petrii_DSM_12804 6
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 2
Bordetella_bronchiseptica_RB50 2
Achromobacter_xylosoxidans_A8 4
Achromobacter_xylosoxidans 4
Nitrosomonas_eutropha_C91 1
Sideroxydans_lithotrophicus_ES-1 1
Methylotenera_versatilis_301 2
Asticcacaulis_excentricus_CB_48 1
Caulobacter_sp._K31 1
Caulobacter_crescentus_NA1000 0
Caulobacter_segnis_ATCC_21756 1
Erythrobacter_litoralis_HTCC2594 1
Sphingopyxis_alaskensis_RB2256 2
Novosphingobium_sp._PP1Y 3
Novosphingobium_aromaticivorans_DSM_12444 2
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 1
Sphingobium_chlorophenolicum_L-1 2
Sphingomonas_sp._MM-1 3
Sphingomonas_wittichii_RW1 3
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1
Hirschia_baltica_ATCC_49814 1
Pseudovibrio_sp._FO-BEG1 1
Ruegeria_sp._TM1040 1
Ketogulonicigenium_vulgare_Y25 1
Ketogulonigenium_vulgarum_WSH-001 1
Rhodobacter_capsulatus_SB_1003 1
Paracoccus_denitrificans_PD1222 1
Tistrella_mobilis_KA081020-065 4
Magnetospirillum_magneticum_AMB-1 1
Granulibacter_bethesdensis_CGDNIH1 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Polymorphum_gilvum_SL003B-26A1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1
Ehrlichia_ruminantium_str._Gardel 1
Anaplasma_marginale_str._Florida 1
Anaplasma_centrale_str._Israel 1
Orientia_tsutsugamushi_str._Boryong 1
Starkeya_novella_DSM_506 2
Methylobacterium_nodulans_ORS_2060 2
Methylobacterium_radiotolerans_JCM_2831 2
Parvibaculum_lavamentivorans_DS-1 4
Ochrobactrum_anthropi_ATCC_49188 2
Brucella_microti_CCM_4915 1
Brucella_pinnipedialis_B2/94 1
Brucella_canis_ATCC_23365 1
Brucella_suis_ATCC_23445 1
Brucella_melitensis_ATCC_23457 1
Brucella_ovis_ATCC_25840 1
Brucella_abortus_S19 1
Sinorhizobium_fredii_NGR234 5
Sinorhizobium_medicae_WSM419 4
Sinorhizobium_meliloti_AK83 4
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1
Rhizobium_etli_CIAT_652 4
Rhizobium_leguminosarum_bv._viciae_3841 4
Agrobacterium_radiobacter_K84 1
Agrobacterium_sp._H13-3 3
Agrobacterium_vitis_S4 1
Mesorhizobium_opportunistum_WSM2075 1
Mesorhizobium_loti_MAFF303099 2
Pelagibacterium_halotolerans_B2 2
Rhodomicrobium_vannielii_ATCC_17100 3
Hyphomicrobium_sp._MC1 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Oligotropha_carboxidovorans_OM4 1
Nitrobacter_winogradskyi_Nb-255 1
Nitrobacter_hamburgensis_X14 2
Bradyrhizobium_japonicum_USDA_110 2
Bradyrhizobium_sp._ORS_278 2
Aggregatibacter_aphrophilus_NJ8700 1
Aggregatibacter_actinomycetemcomitans_D7S-1 1
Haemophilus_somnus_129PT 1
Pasteurella_multocida_subsp._multocida_str._3480 1
Haemophilus_ducreyi_35000HP 1
Haemophilus_parainfluenzae_T3T1 1
Haemophilus_influenzae_PittEE 1
Actinobacillus_succinogenes_130Z 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1
Oceanimonas_sp._GK1 1
Tolumonas_auensis_DSM_9187 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aliivibrio_salmonicida_LFI1238 1
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 1
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 1
Vibrio_cholerae_O395 1
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 1
Psychromonas_sp._CNPT3 1
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Hahella_chejuensis_KCTC_2396 2
Alcanivorax_borkumensis_SK2 1
Chromohalobacter_salexigens_DSM_3043 2
Halomonas_elongata_DSM_2581 2
Methylomicrobium_alcaliphilum 0
Methylomonas_methanica_MC09 0
Methylococcus_capsulatus_str._Bath 0
Rhodanobacter_denitrificans 3
Pseudoxanthomonas_spadix_BD-a59 1
Stenotrophomonas_maltophilia_K279a 1
Xanthomonas_axonopodis_pv._citri_str._306 2
Xanthomonas_campestris_pv._campestris_str._B100 2
Halothiobacillus_neapolitanus_c2 1
Alkalilimnicola_ehrlichii_MLHE-1 2
Thioalkalivibrio_sp._K90mix 2
Halorhodospira_halophila_SL1 1
Allochromatium_vinosum_DSM_180 2
Thiocystis_violascens_DSM_198 3
Legionella_longbeachae_NSW150 1
gamma_proteobacterium_HdN1 0
Xenorhabdus_nematophila_ATCC_19061 1
Edwardsiella_ictaluri_93-146 1
Edwardsiella_tarda_EIB202 1
Rahnella_sp._Y9602 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 2
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_sp._AS12 1
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 1
Dickeya_zeae_Ech1591 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
Pantoea_vagans_C9-1 1
Erwinia_tasmaniensis_Et1/99 1
Erwinia_sp._Ejp617 1
Erwinia_billingiae_Eb661 1
Erwinia_pyrifoliae_Ep1/96 1
Erwinia_amylovora_ATCC_49946 1
Klebsiella_oxytoca_E718 2
Klebsiella_pneumoniae_NTUH-K2044 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 4
Pseudomonas_stutzeri_A1501 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Psychrobacter_sp._PRwf-1 1
Moraxella_catarrhalis_RH4 1
Acinetobacter_oleivorans_DR1 1
Methylophaga_sp._JAM1 1
Thiomicrospira_crunogena_XCL-2 1
Thioalkalimicrobium_cyclicum_ALM1 1
Francisella_noatunensis_subsp._orientalis_str._Toba_04 1
Francisella_sp._TX077308 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 2
Francisella_tularensis_subsp._tularensis_WY96-3418 2
Francisella_cf._novicida_3523 1
Francisella_novicida_U112 2
Candidatus_Caldiarchaeum_subterraneum 1
Cenarchaeum_symbiosum_A 1
Candidatus_Nitrosopumilus_sp._AR2 1
Nitrosopumilus_maritimus_SCM1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Pyrolobus_fumarii_1A 1
Thermogladius_cellulolyticus_1633 1
Aeropyrum_pernix_K1 2
Ignicoccus_hospitalis_KIN4/I 1
Thermosphaera_aggregans_DSM_11486 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_mucosus_DSM_2162 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 2
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 3
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_calidifontis_JCM_11548 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanohalophilus_mahii_DSM_5219 2
Methanoregula_boonei_6A8 1
Thermococcus_sibiricus_MM_739 1
Thermoplasmatales_archaeon_BRNA1 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 2
Halomicrobium_mukohataei_DSM_12286 2
Halorhabdus_utahensis_DSM_12940 1
Haloarcula_hispanica_ATCC_33960 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 6
Paracoccidioides_brasiliensis_Pb01_ 5
Paracoccidioides_brasiliensis_Pb03_ 6
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 4
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   12
Hordeum_vulgare_22   (Domesticated barley)   17
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   14
Trypanosoma_brucei_Lister_427_v4.1 6
Neospora_caninum_Nc-Liverpool_6.2 8
Plasmodium_falciparum_HB3_ 4
Plasmodium_falciparum_Dd2_ 1
Chroococcidiopsis_thermalis_PCC_7203 2
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._PCC_7002 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 3
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7424 2
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Calothrix_parietina_Calothrix_sp._PCC_6303 3
Cylindrospermum_stagnale_PCC_7417 2
Anabaena_cylindrica_PCC_7122 2
Frankia_sp._EuI1c 7
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 4
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 3
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 5
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 4
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 3
Propionibacterium_avidum_44067 1
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Propionibacterium_acidipropionici_ATCC_4875 2
Actinoplanes_friuliensis_DSM_7358 2
Rhodococcus_pyridinivorans_SB3094 2
Rhodococcus_erythropolis_CCM2595 2
Mycobacterium_sp._MOTT36Y 2
Mycobacterium_sp._JDM601 1
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_liflandii_128FXT 3
Mycobacterium_sp._KMS 2
Mycobacterium_sp._MCS 2
Mycobacterium_yongonense_05-1390 2
Mycobacterium_intracellulare_MOTT-64 2
Mycobacterium_indicus_pranii_MTCC_9506 3
Mycobacterium_intracellulare_MOTT-02 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2
Mycobacterium_canettii_CIPT_140070017 2
Mycobacterium_canettii_CIPT_140060008 2
Mycobacterium_canettii_CIPT_140070008 2
Mycobacterium_canettii_CIPT_140070010 2
Mycobacterium_tuberculosis_EAI5/NITR206 2
Mycobacterium_tuberculosis_EAI5 2
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 2
Mycobacterium_tuberculosis_UT205 2
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 2
Mycobacterium_tuberculosis_CTRI-2 2
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 2
Mycobacterium_tuberculosis_KZN_605 2
Mycobacterium_tuberculosis_KZN_4207 2
Mycobacterium_tuberculosis_CCDC5180 2
Mycobacterium_tuberculosis_CCDC5079 2
Mycobacterium_tuberculosis_CCDC5079 2
Mycobacterium_tuberculosis_H37Ra 2
Mycobacterium_tuberculosis_str._Haarlem/NITR202 3
Mycobacterium_tuberculosis_str._Haarlem 2
Mycobacterium_tuberculosis_F11 2
Mycobacterium_tuberculosis_H37Rv 2
Mycobacterium_tuberculosis_CDC1551 2
Mycobacterium_bovis_AF2122/97 2
Mycobacterium_bovis_BCG_str._Korea_1168P 2
Mycobacterium_bovis_BCG_str._Mexico 2
Mycobacterium_bovis_BCG_str._Tokyo_172 2
Mycobacterium_gilvum_Spyr1 2
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_kansasii_ATCC_12478 3
Corynebacterium_maris_DSM_45190 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 2
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_ulcerans_BR-AD22 2
Corynebacterium_ulcerans_809 2
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_argentoratense_DSM_44202 2
Corynebacterium_callunae_DSM_20147 2
Corynebacterium_pseudotuberculosis_258 2
Corynebacterium_pseudotuberculosis_Cp162 2
Corynebacterium_pseudotuberculosis_P54B96 2
Corynebacterium_pseudotuberculosis_267 2
Corynebacterium_pseudotuberculosis_1/06-A 2
Corynebacterium_pseudotuberculosis_42/02-A 2
Corynebacterium_pseudotuberculosis_3/99-5 2
Corynebacterium_pseudotuberculosis_31 2
Corynebacterium_pseudotuberculosis_CIP_52.97 2
Corynebacterium_pseudotuberculosis_PAT10 2
Corynebacterium_pseudotuberculosis_I19 2
Corynebacterium_pseudotuberculosis_FRC41 2
Corynebacterium_pseudotuberculosis_C231 2
Corynebacterium_pseudotuberculosis_1002 2
Corynebacterium_glutamicum_MB001 2
Corynebacterium_glutamicum_SCgG2 2
Corynebacterium_glutamicum_SCgG1 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_diphtheriae_BH8 3
Corynebacterium_diphtheriae_INCA_402 3
Corynebacterium_diphtheriae_VA01 3
Corynebacterium_diphtheriae_HC04 3
Corynebacterium_diphtheriae_HC03 3
Corynebacterium_diphtheriae_HC02 3
Corynebacterium_diphtheriae_HC01 3
Corynebacterium_diphtheriae_241 3
Corynebacterium_diphtheriae_CDCE_8392 3
Corynebacterium_diphtheriae_PW8 2
Corynebacterium_diphtheriae_C7_(beta) 3
Corynebacterium_diphtheriae_31A 3
Leifsonia_xyli_subsp._cynodontis_DSM_46306 3
Clavibacter_michiganensis_subsp._sepedonicus 2
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 2
Gardnerella_vaginalis_HMP9231 1
Gardnerella_vaginalis_ATCC_14019 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1
Bifidobacterium_animalis_subsp._lactis_AD011 1
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_asteroides_PRL2011 2
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_graevenitzii_C83_ 1
Actinomyces_odontolyticus_ATCC_17982 1
Actinomyces_viscosus_C505 4
Chthonomonas_calidirosea_T49 2
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_NCC_533 1
Lactobacillus_salivarius_UCC118 1
Lactobacillus_plantarum_WCFS1 1
Lactobacillus_acidophilus_La-14 1
Lactobacillus_acidophilus_NCFM 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1
Streptococcus_constellatus_subsp._pharyngis_C818 1
Streptococcus_constellatus_subsp._pharyngis_C232 1
Streptococcus_intermedius_B196 1
Streptococcus_intermedius_C270 1
Streptococcus_anginosus_C238 1
Streptococcus_anginosus_C1051 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1
Streptococcus_equi_subsp._zooepidemicus 1
Streptococcus_mutans_GS-5 1
Streptococcus_mutans_LJ23 1
Streptococcus_mutans_UA159 1
Streptococcus_thermophilus_LMG_18311 1
Streptococcus_salivarius_CCHSS3 1
Streptococcus_salivarius_JIM8777 1
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y4.1MC1 1
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_coagulans_36D1 1
Salinibacter_ruber_DSM_13855 2
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 2
Prevotella_sp._oral_taxon_299_str._F0039 2
Prevotella_dentalis_DSM_3688 0
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Chlamydia_pecorum_P787 1
Chlamydia_pecorum_W73 1
Chlamydia_pecorum_PV3056/3 1
Chlamydophila_pneumoniae_LPCoLN 1
Chlamydophila_pneumoniae_J138 1
Chlamydophila_pneumoniae_CWL029 1
Chlamydophila_pneumoniae_AR39 1
Chlamydia_psittaci_01DC12 1
Chlamydophila_psittaci_RD1 1
Chlamydia_psittaci_Mat116 1
Chlamydia_trachomatis_C/TW-3 1
Chlamydia_trachomatis_L2/434/Bu(f) 1
Chlamydia_trachomatis_L2/434/Bu(i) 1
Chlamydia_trachomatis_IU888 1
Chlamydia_trachomatis_IU824 1
Chlamydia_trachomatis_L2b/Canada2 1
Chlamydia_trachomatis_L2b/Canada1 1
Chlamydia_trachomatis_L3/404/LN 1
Chlamydia_trachomatis_L2b/Ams5 1
Chlamydia_trachomatis_L2b/Ams4 1
Chlamydia_trachomatis_L2b/Ams3 1
Chlamydia_trachomatis_L2b/Ams2 1
Chlamydia_trachomatis_L2b/Ams1 1
Chlamydia_trachomatis_L2b/795 1
Chlamydia_trachomatis_L2b/CV204 1
Chlamydia_trachomatis_L2b/LST 1
Chlamydia_trachomatis_L2b/UCH-2 1
Chlamydia_trachomatis_L2b/8200/07 1
Chlamydia_trachomatis_L2/25667R 1
Chlamydia_trachomatis_L1/224 1
Chlamydia_trachomatis_L1/115 1
Chlamydia_trachomatis_L1/440/LN 1
Chlamydia_trachomatis_K/SotonK1 1
Chlamydia_trachomatis_Ia/SotonIa3 1
Chlamydia_trachomatis_Ia/SotonIa1 1
Chlamydia_trachomatis_G/SotonG1 1
Chlamydia_trachomatis_F/SotonF3 1
Chlamydia_trachomatis_F/SW5 1
Chlamydia_trachomatis_F/SW4 1
Chlamydia_trachomatis_E/SotonE8 1
Chlamydia_trachomatis_E/SotonE4 1
Chlamydia_trachomatis_E/SW3 1
Chlamydia_trachomatis_D/SotonD6 1
Chlamydia_trachomatis_D/SotonD5 1
Chlamydia_trachomatis_D/SotonD1 1
Chlamydia_trachomatis_A/5291 1
Chlamydia_trachomatis_A/363 1
Chlamydia_trachomatis_RC-J/971 1
Chlamydia_trachomatis_RC-L2/55 1
Chlamydia_trachomatis_J/6276tet1 1
Chlamydia_trachomatis_RC-J/966 1
Chlamydia_trachomatis_RC-J(s)/122 1
Chlamydia_trachomatis_RC-F(s)/342 1
Chlamydia_trachomatis_RC-L2(s)/3 1
Chlamydia_trachomatis_RC-J/953 1
Chlamydia_trachomatis_RC-J943 1
Chlamydia_trachomatis_RC-Fs852 1
Chlamydia_trachomatis_RC-L2s46 1
Chlamydia_trachomatis_RC-F69 1
Chlamydia_trachomatis_L2c 1
Chlamydia_trachomatis_D-LC 1
Chlamydia_trachomatis_D-EC 1
Chlamydia_trachomatis_G/9301 1
Chlamydia_trachomatis_G/11074 1
Chlamydia_trachomatis_G/11222 1
Chlamydia_trachomatis_G/9768 1
Chlamydia_trachomatis_E/150 1
Chlamydia_trachomatis_E/11023 1
Chlamydia_trachomatis_B/TZ1A828/OT 1
Chlamydia_trachomatis_Sweden2 1
Chlamydia_trachomatis_E/Bour 1
Chlamydia_trachomatis_A2497 1
Chlamydia_trachomatis_A2497 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 1
Chlamydia_trachomatis_434/Bu 1
Chlamydia_trachomatis_A/HAR-13 1
Chlamydia_trachomatis_D/UW-3/CX 1
Singulisphaera_acidiphila_DSM_18658 6
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Hydrogenobacter_thermophilus_TK-6 3
Leptospirillum_ferriphilum_ML-04 1
Acidithiobacillus_ferrooxidans_ATCC_23270 2
Bdellovibrio_exovorus_JSS 2
Bdellovibrio_bacteriovorus_str._Tiberius 2
Helicobacter_pylori_XZ274 1
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_desulfuricans_ND132 2
Geobacter_sp._M18 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 6
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 2
Myxococcus_stipitatus_DSM_14675 2
Neisseria_meningitidis_WUE_2594 1
Neisseria_meningitidis_G2136 1
Neisseria_meningitidis_M04-240196 1
Neisseria_meningitidis_M01-240149 1
Neisseria_meningitidis_NZ-05/33 1
Neisseria_meningitidis_M01-240355 1
Neisseria_meningitidis_8013 1
Neisseria_meningitidis_053442 1
Neisseria_meningitidis_Z2491 1
Neisseria_meningitidis_H44/76 1
Neisseria_meningitidis_alpha710 1
Neisseria_meningitidis_MC58 1
Neisseria_gonorrhoeae_TCDC-NG08107 1
Neisseria_gonorrhoeae_FA_1090 1
Burkholderia_phenoliruptrix_BR3459a 3
Pandoraea_pnomenusa_3kgm 2
Ralstonia_pickettii_12J 2
Ralstonia_solanacearum_FQY_4 3
Ralstonia_solanacearum_Po82 3
Ralstonia_solanacearum_PSI07 3
Ralstonia_solanacearum_CMR15 3
Ralstonia_solanacearum_GMI1000 3
Burkholderia_sp._YI23 3
Burkholderia_sp._CCGE1003 4
Burkholderia_sp._CCGE1001 3
Burkholderia_sp._KJ006 2
Burkholderia_thailandensis_MSMB121 3
Burkholderia_pseudomallei_MSHR305 2
Burkholderia_pseudomallei_NCTC_13179 2
Burkholderia_pseudomallei_BPC006 2
Burkholderia_pseudomallei_1026b 2
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 2
Burkholderia_pseudomallei_1710b 2
Burkholderia_pseudomallei_K96243 2
Burkholderia_mallei_NCTC_10229 3
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 2
Burkholderia_lata 4
Burkholderia_ambifaria_MC40-6 3
Burkholderia_cenocepacia_MC0-3 3
Burkholderia_cenocepacia_AU_1054 4
Burkholderia_cenocepacia_J2315 4
Burkholderia_multivorans_ATCC_17616 4
Burkholderia_cepacia_GG4 2
Alicycliphilus_denitrificans_BC 2
Variovorax_paradoxus_B4 4
Variovorax_paradoxus_EPS 3
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 3
Bordetella_bronchiseptica_MO149 2
Bordetella_bronchiseptica_253 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 3
Sulfuricella_denitrificans_skB26 1
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1
Zymomonas_mobilis_subsp._mobilis_CP4 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 2
Paracoccus_aminophilus_JCM_7686 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 1
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1
Ehrlichia_muris_AS145 1
Ehrlichia_ruminantium_str._Welgevonden 1
Ehrlichia_ruminantium_str._Welgevonden 1
Anaplasma_marginale_str._Dawn 1
Anaplasma_marginale_str._St._Maries 1
Orientia_tsutsugamushi_str._Ikeda 1
Methylobacterium_extorquens_PA1 1
Brucella_canis_HSK_A52141 1
Brucella_suis_VBI22 1
Brucella_suis_1330 1
Brucella_suis_1330 1
Brucella_melitensis_NI 1
Brucella_melitensis_M5-90 1
Brucella_melitensis_M28 1
Brucella_melitensis_bv._1_str._16M 1
Brucella_abortus_A13334 1
Brucella_melitensis_biovar_Abortus_2308 1
Brucella_abortus_bv._1_str._9-941 1
Sinorhizobium_fredii_USDA_257 4
Sinorhizobium_fredii_HH103 4
Sinorhizobium_meliloti_2011 4
Sinorhizobium_meliloti_GR4 4
Sinorhizobium_meliloti_Rm41 4
Sinorhizobium_meliloti_SM11 3
Sinorhizobium_meliloti_BL225C 4
Sinorhizobium_meliloti_1021 4
Rhizobium_etli_CFN_42 4
Rhizobium_etli_bv._mimosae_str._Mim1 4
Rhizobium_tropici_CIAT_899 3
Rhizobium_leguminosarum_bv._trifolii_WSM2304 4
Rhizobium_leguminosarum_bv._trifolii_WSM1325 5
Liberibacter_crescens_BT-1 1
Mesorhizobium_australicum_WSM2073 1
Hyphomicrobium_nitrativorans_NL23 1
Hyphomicrobium_denitrificans_1NES1 1
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 2
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 2
Bradyrhizobium_oligotrophicum_S58 3
Bradyrhizobium_japonicum_USDA_6 1
Mannheimia_succiniciproducens_MBEL55E 2
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 2
Aggregatibacter_actinomycetemcomitans_ANH9381 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1
Haemophilus_somnus_2336 1
Mannheimia_haemolytica_USMARC_2286 1
Mannheimia_haemolytica_M42548 1
Mannheimia_haemolytica_D174 1
Mannheimia_haemolytica_D171 1
Mannheimia_haemolytica_D153 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1
Pasteurella_multocida_36950 1
Pasteurella_multocida_subsp._multocida_str._HN06 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Haemophilus_influenzae_F3047 1
Haemophilus_influenzae_F3031 1
Haemophilus_influenzae_10810 1
Haemophilus_influenzae_PittGG 1
Haemophilus_influenzae_86-028NP 1
Haemophilus_influenzae_R2866 1
Haemophilus_influenzae_R2846 1
Haemophilus_influenzae_Rd_KW20 1
Actinobacillus_suis_H91-0380 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1
Vibrio_fischeri_ES114 1
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 2
Shewanella_baltica_OS117 1
Shewanella_sp._MR-7 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 2
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 2
Alteromonas_macleodii_AltDE1 2
Alteromonas_macleodii_str._'English_Channel_673' 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 2
Alcanivorax_dieselolei_B5 1
Thalassolituus_oleivorans_MIL-1 1
Stenotrophomonas_maltophilia_D457 2
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xanthomonas_citri_subsp._citri_Aw12879 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._campestris_str._8004 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Thioflavicoccus_mobilis_8321 4
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Rahnella_aquatilis_HX2 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 2
Yersinia_pestis_Nepal516 2
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 2
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Erwinia_pyrifoliae_DSM_12163 1
Erwinia_amylovora_CFBP1430 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1
Enterobacter_aerogenes_EA1509E 1
Escherichia_coli_UMNK88 2
Escherichia_coli_APEC_O1 1
Escherichia_coli_O111:H-_str._11128 1
Enterobacter_cloacae_EcWSU1 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_stutzeri_CCUG_29243 3
Pseudomonas_stutzeri_DSM_4166 2
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 2
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 2
Pseudomonas_putida_KT2440 2
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 2
Pseudomonas_resinovorans_NBRC_106553 3
Pseudomonas_aeruginosa_SCV20265 2
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 2
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 2
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 2
Pseudomonas_aeruginosa_PAO1 1
Acinetobacter_johnsonii__SH046 1
Acinetobacter_lwoffii__SH145 1
Methylophaga_sp._JAM7 1
Francisella_noatunensis_subsp._orientalis_LADL--07-285A 1
Francisella_tularensis_subsp._mediasiatica_FSC147 2
Francisella_tularensis_subsp._holarctica_F92 2
Francisella_tularensis_subsp._holarctica_FTNF002-00 2
Francisella_tularensis_subsp._holarctica_OSU18 2
Francisella_tularensis_subsp._holarctica_LVS 2
Francisella_tularensis_subsp._holarctica_FSC200 2
Francisella_tularensis_subsp._tularensis_TIGB03 2
Francisella_tularensis_subsp._tularensis_TI0902 2
Francisella_tularensis_subsp._tularensis_NE061598 2
Francisella_tularensis_subsp._tularensis_FSC198 2
Francisella_tularensis_subsp._tularensis_SCHU_S4 2
Francisella_cf._novicida_Fx1 2
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Caldisphaera_lagunensis_DSM_15908 1
Aeropyrum_camini_SY1_=_JCM_12091 2
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 2
Sulfolobus_acidocaldarius_N8 1
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 2
Natronobacterium_gregoryi_SP2 2
Halorhabdus_tiamatea_SARL4B 1
Haloarcula_hispanica_N601 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   6
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   6
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5
Takifugu_rubripes_69_4   (Torafugu)   7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   8
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   16

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   15
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   49
Ricinus_communis__(Early_assembly)   (Castor bean)   14
Nicotiana_benthamiana_0.4.4_(Early_draft) 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   11
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 2
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 134
STRING_v9.0.5_(STRING) 1327
Uniprot_2018_03_genome 125435
NCBI_2017_08_genome 62391
NCBI_viral_sequences_(Viral) 2
PDB_chains_(SCOP_1.75)_(PDB) 8
Protein_Data_Bank_(all_PDB_sequenc) 4
TargetDB__(Targets) 96
Protozoadb_2010_08_(Protozoadb) 148
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 206

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.