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  Home > SCOP hierarchy > Domain combination - _gap_,52833,_gap_,54236,_gap_

Domain combinations for _gap_,52833,_gap_,54236,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52833 - Thioredoxin-like
54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Drosophila_suzukii 1
Schistosoma_mansoni_ 1
Sporisorium_reilianum_22 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 1
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Verticillium_dahliae_VdLs.17_ 0
Paracoccidioides_brasiliensis_Pb18_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Penicillium_marneffei_ATCC_18224_ 0
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_dubliniensis_CD36_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Candida_guilliermondii_ATCC_6260_ 1
Debaromyces_hansenii 1
Lachancea_kluyveri_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Catenaria_anguillulae_PL171_v1.0 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Malus_domestica_v196   (Apple)   0
Actinidia_chinensis_Hongyang_ 0
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   0
Oryza_glumaepatula_22 2
Oryza_nivara_22 2
Panicum_virgatum_v202   (Switchgrass)   1
Musa_balbisiana   (Balbis banana)   0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Phaeodactylum_tricornutumCCAP_1055/1 0

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 1
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Candida_albicans_WO-1_ 1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
STRING_v9.0.5_(STRING) 7
NCBI_2017_08_genome 39
Uniprot_2018_03_genome 1586

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.