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Home > SCOP hierarchy > Domain combination - _gap_,53098,56672

Domain combinations for _gap_,53098,56672 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53098 - Ribonuclease H-like
56672 - DNA/RNA polymerases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 9

Pan_troglodytes_76_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_76_3.1 (Western gorilla) 4

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 4

Papio_anubis_76 (Olive baboon) 2

Macaca_mulatta_76_1 (Rhesus monkey) 5

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 6

Otolemur_garnettii_76_3 (Small-eared galago) 2

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 2

Mus_musculus_76_38 (House mouse) 5

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 4

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 0

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 3

Ovis_aries_76_3.1 (Sheep) 3

Vicugna_pacos_76_1 (Alpaca) 0

Tursiops_truncatus_76_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_76_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_76_1 (Giant panda) 4

Canis_familiaris_76_3.1 (Dog) 4

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 4

Myotis_lucifugus_76_2.0 (Little brown bat) 3

Pteropus_vampyrus_76_1 (Large flying fox) 1

Sorex_araneus_76_1 (European shrew) 1

Erinaceus_europaeus_76 (Western European hedgehog) 0

Procavia_capensis_76_1 (Cape rock hyrax) 2

Loxodonta_africana_76_3 (African savanna elephant) 3

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 2

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 2

Saccoglossus_kowalevskii_v3.0 18

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Meleagris_gallopavo_76_2 (Turkey) 2

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 2

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 3

Anolis_carolinensis_76_2.0 (Green anole) 5

Xenopus_laevis_ (African clawed frog) 6

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 3

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 2

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 2

Takifugu_rubripes_76_4 (Torafugu) 4

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 2

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 4

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 3

Oikopleura_dioica 2

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 12

Ciona_intestinalis_76 (Vase tunicate) 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 14

Adineta_vaga 3

Octopus_bimaculoides_280 1

Crassostrea_gigas_22 (Pacific oyster) 4

Lottia_gigantea_ (Owl limpet) 3

Helobdella_robusta_ 2

Capitella_sp._I_ 2

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 1

Bombyx_mori_ (Domestic silkworm) 2

Nasonia_vitripennis_ (Jewel wasp) 21

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 6

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 4

Linepithema_humile_v1.1 (Argentine ant) 3

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 2

Solenopsis_invicta_v.2.2.3 (Red fire ant) 3

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 3

Atta_cephalotes_v1.1 2

Camponotus_floridanus_v3.3 (Florida carpenter ant) 4

Lucilia_cuprina (Australian sheep blowfly) 3

Drosophila_grimshawi_1.3 3

Drosophila_willistoni_1.3 3

Drosophila_pseudoobscura_2.13 2

Drosophila_persimilis_1.3 1

Drosophila_suzukii 4

Drosophila_yakuba_1.3 2

Drosophila_simulans_1.3 1

Drosophila_sechellia_1.3 2

Drosophila_melanogaster_76_5 (Fruit fly) 2

Drosophila_erecta_1.3 3

Drosophila_ananassae_1.3 2

Drosophila_virilis_1.2 3

Drosophila_mojavensis_1.3 2

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 2

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 2

Anopheles_darlingi_22 (American malaria mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 10

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 3

Acyrthosiphon_pisum_ (Pea aphid) 6

Rhodnius_prolixus_22 3

Daphnia_pulex_ (Common water flea) 2

Strigamia_maritima_22 5

Sarcoptes_scabiei 0

Tetranychus_urticae_ (Two-spotted spider mite) 2

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Pristionchus_pacificus_ 3

Meloidogyne_incognita_ (Southern root-knot nematode) 79

Meloidogyne_hapla_ 4

Onchocerca_volvulus_22 2

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 2

Caenorhabditis_japonica_ 2

Caenorhabditis_brenneri_ 17

Caenorhabditis_remanei_ 30

Caenorhabditis_elegans_76_235 (Roundworm) 3

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 4

Hymenolepis_microstoma_ 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Taenia_solium_ (Pork tapeworm) 2

Schistosoma_mansoni_ 1

Mnemiopsis_leidyi (Sea walnut) 4

Acropora_digitifera_v1.0 5

Nematostella_vectensis_1.0 (Starlet sea anemone) 1

Hydra_vulgaris 2

Amphimedon_queenslandica 1

Trichoplax_adhaerens_ 1

Proterospongia_sp._ATCC_50818_ 2

Monosiga_brevicollis_ 1

Sphaeroforma_arctica_JP610_ 3

Capsaspora_owczarzaki_ATCC_30864_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 2

Mortierella_verticillata_NRRL_6337_ 3

Phycomyces_blakesleeanus_ 1

Rhizopus_oryzae_RA_99-880_ 2

Mucor_circinelloides_ 3

Rhizomucor_miehei_CAU432_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 1

Ustilago_maydis_ 5

Mixia_osmundae_IAM_14324_v1.0 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3

Melampsora_laricis-populina_ 1

Rhodotorula_graminis_WP1_v1.0 3

Sporobolomyces_roseus_IAM_13481_ 3

Microbotryum_violaceum_22 4

Wallemia_sebi_v1.0 2

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 3

Serpula_lacrymans_var._lacrymans_S7.9_ 2

Coniophora_puteana 2

Hydnomerulius_pinastri_v2.0 2

Paxillus_rubicundulus_Ve08.2h10_v1.0 2

Pisolithus_microcarpus_441_v1.0 4

Pisolithus_tinctorius_Marx_270_v1.0 4

Scleroderma_citrinum_Foug_A_v1.0 5

Coprinopsis_cinerea_okayama7_130_v3 2

Pleurotus_ostreatus_ (Oyster mushroom) 3

Amanita_thiersii_Skay4041_v1.0 2

Amanita_muscaria_Koide_v1.0 (Fly agaric) 2

Galerina_marginata_v1.0 4

Hebeloma_cylindrosporum_h7_v2.0 2

Laccaria_bicolor_S238N-H82_ 2

Agaricus_bisporus_var._bisporus_ 3

Schizophyllum_commune_ 2

Stereum_hirsutum_FP-91666_SS1__v1.0 2

Heterobasidion_annosum_ 4

Gloeophyllum_trabeumv1.0 2

Punctularia_strigosozonata_v1.0 2

Sebacina_vermifera_MAFF_305830_v1.0 3

Fomitiporia_mediterranea_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 2

Postia_placenta_ 1

Wolfiporia_cocos_MD-104_SS10__v1.0 3

Fomitopsis_pinicolav1.0 2

Fomitopsis_pinicola_FP-58527_SS1_v3.0 2

Phanerochaete_chrysosporium_RP-78_2.1 3

Dichomitus_squalens 2

Trametes_versicolor_v1.0 2

Tremella_mesenterica_ (Witches' butter) 2

Daldinia_eschscholzii_EC12_v1.0 2

Apiospora_montagnei_NRRL_25634_v1.0 2

Magnaporthe_poae_ATCC_64411_22 2

Magnaporthe_grisea_70-15_ 2

Podospora_anserina_ 2

Sporotrichum_thermophile_ATCC_42464_ 2

Thielavia_terrestris_NRRL_8126_ 2

Chaetomium_globosum_CBS_148.51_ 6

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 2

Verticillium_albo-atrum_VaMs.102_ 3

Verticillium_dahliae_VdLs.17_ 2

Acremonium_alcalophilumv_1.0 2

Glomerella_graminicola_22 2

Fusarium_graminearum_ 2

Nectria_haematococca_mpVI_ 2

Fusarium_oxysporum_f._sp._lycopersici_4286_ 2

Fusarium_verticillioides_7600_ 2

Trichoderma_asperellum_CBS_433.97_v1.0 2

Trichoderma_atroviride_ 2

Trichoderma_citrinoviride_v1.0 2

Trichoderma_reesei_1.2 2

Trichoderma_virens_Gv29-8_ 2

Trichoderma_longibrachiatum_ATCC_18648_v1.0 2

Trichoderma_harzianum_CBS_226.95_v1.0 2

Amorphotheca_resinae_v1.0 (Creosote fungus) 2

Botrytis_cinerea_B05.10_ 2

Sclerotinia_sclerotiorum_ 2

Blumeria_graminis_22 3

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 2

Setosphaeria_turcica_v1.0 1

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 1

Alternaria_brassicicola_ 2

Pyrenophora_teres_f._teres_22 2

Pyrenophora_tritici-repentis_ 2

Stagonospora_nodorum_ 3

Mycosphaerella_graminicola_IPO323_ 2

Dothistroma_septosporum 2

Septoria_musiva_v1.0 2

Mycosphaerella_fijiensis_CIRAD86_ 3

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2

Paracoccidioides_brasiliensis_Pb18_ 2

Coccidioides_posadasii_RMSCC_3488_ 2

Coccidioides_immitis_RS_ 2

Ajellomyces_dermatitidis_SLH14081_ 2

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 2

Trichophyton_equinum_CBS_127.97_ 2

Trichophyton_verrucosum_HKI_0517_ 2

Arthroderma_benhamiae_CBS_112371_ 2

Trichophyton_tonsurans_CBS_112818_ 2

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 2

Aspergillus_zonatus_v1.0 2

Penicillium_chrysogenum_Wisconsin_54-1255_ 6

Penicillium_chrysogenum_v1.0 2

Aspergillus_acidus_v1.0 2

Aspergillus_fumigatus_Af293 2

Aspergillus_brasiliensis_v1.0 2

Aspergillus_nidulans_FGSC_A4_ 2

Aspergillus_sydowii_v1.0 2

Aspergillus_versicolor_v1.0 2

Aspergillus_glaucus 2

Aspergillus_carbonarius_ITEM_5010_ 2

Neosartorya_fischeri_NRRL_181_ 2

Aspergillus_terreus_NIH2624_ 3

Aspergillus_tubingensis_v1.0 2

Aspergillus_wentii_v1.0 2

Aspergillus_oryzae_RIB40_ 3

Aspergillus_niger_22 14

Aspergillus_niger_ATCC_1015_ 2

Aspergillus_flavus_NRRL3357_ 2

Aspergillus_clavatus_NRRL_1_ 2

Penicillium_marneffei_ATCC_18224_ 3

Tuber_melanosporum_Mel28_22 2

Tuber_melanosporum_Vittad_ (Perigord truffle) 9

Hansenula_polymorpha_v2.0 2

Dekkera_bruxellensis_CBS_2499_v2.0 2

Pichia_membranifaciensv1.0 2

Candida_tanzawaensis_NRRL_Y-17324__v1.0 2

Candida_dubliniensis_CD36_ 2

Candida_tropicalis_MYA-3404_ 2

Candida_parapsilosis_ 2

Candida_albicans_SC5314 3

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Babjeviella_inositovora_NRRL_Y-12698_v1.0 2

Pichia_stipitis_CBS_6054_ 3

Candida_guilliermondii_ATCC_6260_ 2

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2

Debaromyces_hansenii 2

Wickerhamomyces_anomalus 2

Pichia_pastoris_GS115_ 3

Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2

Yarrowia_lipolytica_CLIB122 2

Candida_lusitaniae_ATCC_42720_ 2

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2

Vanderwaltozyma_polyspora_DSM_70294_ 2

Candida_glabrata_CBS138 2

Kluyveromyces_thermotolerans_CBS_6340 2

Lachancea_kluyveri_ 2

Kluyveromyces_waltii 2

Ashbya_gossypii_ATCC_10895_ 2

Zygosaccharomyces_rouxii_ 2

Saccharomyces_mikatae_MIT 3

Saccharomyces_paradoxus_MIT 2

Saccharomyces_cerevisiae_76 (Baker's yeast) 2

Saccharomyces_bayanus_MIT 1

Kluyveromyces_lactis 2

Schizosaccharomyces_cryophilus_OY26_22 2

Schizosaccharomyces_octosporus_yFS286_ 3

Schizosaccharomyces_japonicus_yFS275_ 3

Schizosaccharomyces_pombe (Fission yeast) 3

Catenaria_anguillulae_PL171_v1.0 2

Allomyces_macrogynus_ATCC_38327_ 4

Spizellomyces_punctatus_DAOM_BR117_ 4

Dictyostelium_discoideum 1

Dictyostelium_purpureum_ 2

Entamoeba_dispar_1.2 8

Entamoeba_invadens_1.2 10

Entamoeba_histolytica_1 9

Selaginella_moellendorffii_ 4

Pinus_taeda (Loblolly pine) 3

Picea_abies (Norway spruce) 1

Eucalyptus_grandis_v201 (Rose gum) 4

Theobroma_cacao_B97-61/B2_v1 (Cacao) 480

Gossypium_raimondii_v221 11

Citrus_clementina_v165 7

Citrus_sinensis_v154 (Sweet orange) 6

Thellungiella_halophila_v173 4

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 7

Capsella_rubella_v183 5

Arabidopsis_lyrata_ (Lyrate rockcress) 4

Arabidopsis_thaliana_10 (Thale cress) 7

Carica_papaya_ (Papaya) 3

Medicago_truncatula_ (Barrel medic) 19

Phaseolus_vulgaris_v186 (French bean) 5

Glycine_max_v109 (Soybean) 9

Cucumis_sativus_v122 (Cucumber) 15

Fragaria_vesca_ (Wild strawberry) 0

Malus_domestica_v196 (Apple) 2

Prunus_persica_v139 (Peach) 4

Linum_usitatissimum_v200 (Flax) 4

Manihot_esculenta_v147 (Cassava) 3

Populus_trichocarpa_v156 (Black cottonwood) 4

Vitis_vinifera_ (Wine grape) 3

Mimulus_guttatus_v140 (Spotted monkey flower) 4

Solanum_lycopersicum_v.2.3 (Tomato) 6

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 4

Aquilegia_coerulea_v195 9

Triticum_urartu_22 3

Triticum_aestivum_22 (Bread wheat) 9

Aegilops_tauschii_22 3

Brachypodium_distachyon_ (Stiff brome) 7

Oryza_barthii_22 (African wild rice) 6

Oryza_meridionalis_22 7

Oryza_glumaepatula_22 6

Oryza_glaberrima (African rice) 5

Oryza_punctata_22 4

Oryza_nivara_22 8

Oryza_brachyantha_22 (Malo sina) 6

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 239

Oryza_sativa_v193 (Rice) 237

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 2

Panicum_virgatum_v202 (Switchgrass) 7

Setaria_italica_v164 (Foxtail millet) 5

Zea_mays_subsp._mays_ (Maize) 2

Zea_mays_v181 (Maize) 4

Sorghum_bicolor_ (Sorghum) 9

Musa_balbisiana (Balbis banana) 85

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 3

Physcomitrella_patens 3

Coccomyxa_subellipsoidea_sp._C-169_v2 2

Asterochloris_sp._Cgr/DA1pho_v1.0 2

Chlorella_variabilis_sp._NC64A_ 2

Chlorella_vulgaris_ 2

Volvox_carteri_f._nagariensis_ 2

Volvox_carteri_v199 1

Chlamydomonas_reinhardtii_4.0 3

Ostreococcus_sp._RCC809_ 1

Ostreococcus_lucimarinus_CCE9901_ 1

Ostreococcus_tauri_ 2

Bathycoccus_prasinos_ 2

Micromonas_sp._RCC299_ 2

Micromonas_pusilla_CCMP1545_v3.0 2

Cyanidioschyzon_merolae_strain_10D_22 3

Cyanidioschyzon_merolae 3

Porphyridium_purpureum_02_2012 8

Thecamonas_trahens_ATCC_50062_ 1

Bigelowiella_natans_CCMP2755_22 2

Giardia_lamblia_2.3 2

Cyanophora_paradoxa_ 4

Leishmania_mexicana_2.4 2

Leishmania_major_strain_Friedlin_ 2

Leishmania_infantum_JPCM5_2.4 2

Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2

Trypanosoma_vivax_ 2

Trypanosoma_cruzi_strain_CL_Brener 2

Trypanosoma_congolense_2.4 3

Trypanosoma_brucei_gambiense_v4.1 2

Trypanosoma_brucei_TREU927_v4.1 2

Ectocarpus_siliculosus 2

Aureococcus_anophagefferens_ 1

Albugo_laibachii_22 5

Pythium_iwayamai_DAOM_BR242034_22 1

Pythium_arrhenomanes_ATCC_12531_22 4

Pythium_ultimum_v1.7-2 3

Pythium_aphanidermatum_DAOM_BR444_22 2

Pythium_irregulare_DAOM_BR486_22 2

Pythium_vexans_DAOM_BR484_22 0

Phytophthora_ramorum_1.1 (Sudden oak death agent) 14

Phytophthora_sojae_1.1 41

Phytophthora_infestans_T30-4_ 9

Phytophthora_capsici_ 1

Hyaloperonospora_arabidopsidis_22 1

Phaeodactylum_tricornutumCCAP_1055/1 1

Fragilariopsis_cylindrus 3

Thalassiosira_pseudonana_CCMP1335 1

Perkinsus_marinus_ATCC_50983_ 4

Paramecium_tetraurelia_ 3

Tetrahymena_thermophila_SB210_1_ 2

Ichthyophthirius_multifiliis_strain_G5_ 3

Cryptosporidium_muris 1

Cryptosporidium_parvum_Iowa_II 1

Neospora_caninum 1

Toxoplasma_gondii_VEG 1

Toxoplasma_gondii_ME49 1

Toxoplasma_gondii_GT1 1

Babesia_bovis_T2Bo_ 4

Theileria_parva__ 1

Theileria_annulata 2

Plasmodium_falciparum_3D7_ 1

Plasmodium_vivax_SaI-1_7.0 1

Plasmodium_knowlesi_strain_H_ 1

Plasmodium_yoelii_ssp._yoelii_1_ 1

Plasmodium_chabaudi_ 1

Plasmodium_berghei_ANKA_ 1

Symbiodinium_minutum_clade_B1_v1.2 2

Naegleria_gruberi_ 2

Trichomonas_vaginalis_ 152

Guillardia_theta_CCMP2712_v1.0_ 3

Emiliania_huxleyi_CCMP1516_ 3

Thermus_scotoductus_SA-01 1

Thermaerobacter_marianensis_DSM_12885 0

Butyrivibrio_proteoclasticus_B316 1

Exiguobacterium_sp._AT1b 1

Bacillus_atrophaeus_1942 1

Bacillus_weihenstephanensis_KBAB4 1

Pelodictyon_phaeoclathratiforme_BU-1 1

Chlorobium_luteolum_DSM_273 1

Chlorobium_phaeovibrioides_DSM_265 1

Chlorobium_tepidum_TLS 1

Chloroherpeton_thalassium_ATCC_35110 1

Fibrella_aestuarina 0

Spirosoma_linguale_DSM_74 0

Turneriella_parva_DSM_21527 1

Treponema_azotonutricium_ZAS-9 1

Treponema_primitia_ZAS-2 1

Deferribacter_desulfuricans_SSM1 0

Desulfobacterium_autotrophicum_HRM2 1

Burkholderia_xenovorans_LB400 1

Burkholderia_sp._RPE64 1

Burkholderia_sp._CCGE1002 1

Alicycliphilus_denitrificans_K601 1

Variovorax_paradoxus_S110 1

Methylobacterium_chloromethanicum_CM4 0

Methylobacterium_extorquens_AM1 0

Methylobacterium_populi_BJ001 0

Methylobacterium_radiotolerans_JCM_2831 0

Saccharophagus_degradans_2-40 1

Aeromonas_veronii_B565 1

Aeromonas_salmonicida_subsp._salmonicida_A449 1

Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1

Vibrio_harveyi_ATCC_BAA-1116 1

Psychromonas_ingrahamii_37 1

Psychromonas_sp._CNPT3 1

Shewanella_piezotolerans_WP3 1

Shewanella_halifaxensis_HAW-EB4 1

Shewanella_sediminis_HAW-EB3 1

Shewanella_denitrificans_OS217 1

Shewanella_pealeana_ATCC_700345 1

Shewanella_oneidensis_MR-1 1

Shewanella_baltica_OS185 1

Shewanella_woodyi_ATCC_51908 1

Shewanella_sp._MR-4 1

Shewanella_amazonensis_SB2B 1

Shewanella_violacea_DSS12 1

Shewanella_putrefaciens_CN-32 1

Colwellia_psychrerythraea_34H 1

Pseudoalteromonas_haloplanktis_TAC125 1

Alteromonas_sp._SN2 1

Alteromonas_macleodii_str._'Deep_ecotype' 1

Hahella_chejuensis_KCTC_2396 1

Pantoea_ananatis_LMG_20103 1

Enterobacter_sp._638 1

Nanoarchaeum_equitans_Kin4-M 1

Candidatus_Caldiarchaeum_subterraneum 1

Candidatus_Nitrosopumilus_sp._AR2 1

Nitrosopumilus_maritimus_SCM1 1

Acidilobus_saccharovorans_345-15 2

Fervidicoccus_fontis_Kam940 2

Pyrolobus_fumarii_1A 2

Hyperthermus_butylicus_DSM_5456 2

Thermogladius_cellulolyticus_1633 2

Ignisphaera_aggregans_DSM_17230 2

Aeropyrum_pernix_K1 2

Ignicoccus_hospitalis_KIN4/I 2

Thermosphaera_aggregans_DSM_11486 2

Staphylothermus_hellenicus_DSM_12710 2

Staphylothermus_marinus_F1 2

Desulfurococcus_fermentans_DSM_16532 2

Desulfurococcus_kamchatkensis_1221n 2

Desulfurococcus_mucosus_DSM_2162 2

Metallosphaera_cuprina_Ar-4 2

Metallosphaera_sedula_DSM_5348 2

Acidianus_hospitalis_W1 2

Sulfolobus_tokodaii_str._7 2

Sulfolobus_islandicus_Y.N.15.51 2

Sulfolobus_solfataricus_P2 2

Sulfolobus_acidocaldarius_DSM_639 2

Thermofilum_sp._1910b 1

Thermofilum_pendens_Hrk_5 1

Vulcanisaeta_moutnovskia_768-28 2

Vulcanisaeta_distributa_DSM_14429 2

Caldivirga_maquilingensis_IC-167 2

Pyrobaculum_sp._1860 2

Pyrobaculum_calidifontis_JCM_11548 2

Pyrobaculum_arsenaticum_DSM_13514 2

Pyrobaculum_oguniense_TE7 2

Thermoproteus_neutrophilus_V24Sta 2

Pyrobaculum_aerophilum_str._IM2 2

Pyrobaculum_islandicum_DSM_4184 2

Thermoproteus_uzoniensis_768-20 2

Thermoproteus_tenax_Kra_1 2

Methanocella_arvoryzae_MRE50 2

Methanocella_conradii_HZ254 2

Methanocella_paludicola_SANAE 2

Methanosaeta_harundinacea_6Ac 1

Methanosaeta_thermophila_PT 1

Methanosaeta_concilii_GP6 1

Methanosalsum_zhilinae_DSM_4017 1

Methanohalobium_evestigatum_Z-7303 1

Methanosarcina_acetivorans_C2A 1

Methanosarcina_mazei_Go1 1

Methanosarcina_barkeri_str._Fusaro 1

Methanosphaerula_palustris_E1-9c 1

Methanoregula_boonei_6A8 1

Methanospirillum_hungatei_JF-1 1

Methanoplanus_petrolearius_DSM_11571 1

Methanoculleus_bourgensis_MS2 1

Methanoculleus_marisnigri_JR1 1

Methanopyrus_kandleri_AV19 1

Salinarchaeum_sp._Harcht-Bsk1 1

Halopiger_xanaduensis_SH-6 1

Haloterrigena_turkmenica_DSM_5511 1

Natrinema_sp._J7-2 1

Halorubrum_lacusprofundi_ATCC_49239 1

Halogeometricum_borinquense_DSM_11551 1

Haloarcula_hispanica_ATCC_33960 1

Halalkalicoccus_jeotgali_B3 1

Halobacterium_salinarum_R1 1

Halobacterium_sp._NRC-1 1

Methanococcus_aeolicus_Nankai-3 1

Methanococcus_voltae_A3 1

Methanococcus_vannielii_SB 1

Methanothermobacter_marburgensis_str._Marburg 1

Methanothermobacter_thermautotrophicus_str._Delta_H 1

Methanosphaera_stadtmanae_DSM_3091 1

Methanobrevibacter_sp._AbM4 1

Methanobrevibacter_ruminantium_M1 1

Methanobrevibacter_smithii_ATCC_35061 1

Complete_genome_sequence_of_Methanobacterium_sp._Mb1 2

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 6

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 2

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 2

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 3

Cryptococcus_neoformans_var._grubii_H99_ 2

Cryptococcus_neoformans_B-3501A_ 4

Cryptococcus_neoformans_JEC21_ 2

Paracoccidioides_brasiliensis_Pb01_ 2

Paracoccidioides_brasiliensis_Pb03_ 2

Coccidioides_posadasii_str._Silveira_ 2

Coccidioides_immitis_RMSCC_3703_ 3

Coccidioides_immitis_RMSCC_2394_ 2

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 2

Histoplasma_capsulatum_H143 2

Histoplasma_capsulatum_H88 2

Histoplasma_capsulatum_G186AR 2

Aspergillus_fumigatus_A1163_ 2

Candida_albicans_WO-1_ 1

Saccharomyces_cerevisiae_UC5 0

Saccharomyces_cerevisiae_PW5 2

Saccharomyces_cerevisiae_CBS7960 1

Saccharomyces_cerevisiae_YJM269 0

Saccharomyces_cerevisiae_T7 2

Saccharomyces_cerevisiae_FostersB 2

Saccharomyces_cerevisiae_FostersO 2

Saccharomyces_cerevisiae_VL3 1

Saccharomyces_cerevisiae_Vin13 1

Saccharomyces_cerevisiae_LalvinQA23 1

Saccharomyces_cerevisiae_AWRI796 1

Saccharomyces_cerevisiae_Sigma1278b 2

Saccharomyces_cerevisiae_W303 2

Saccharomyces_cerevisiae_JAY291 2

Saccharomyces_cerevisiae_AWRI1631 1

Saccharomyces_cerevisiae_CLIB215 0

Saccharomyces_cerevisiae_YJM789_ 2

Saccharomyces_cerevisiae_YJM789 2

Saccharomyces_cerevisiae_RM11-1a 1

Saccharomyces_cerevisiae_RM11-1a_ 1

Saccharomyces_cerevisiae_SGD_(SGD) (Baker's yeast) 2

Schizosaccharomyces_pombe_972h-_ 3

Batrachochytrium_dendrobatidis_JEL423_ 2

Batrachochytrium_dendrobatidis_JAM81_ 2

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 108

Hordeum_vulgare_22 (Domesticated barley) 15

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 54

Trypanosoma_brucei_Lister_427_v4.1 2

Neospora_caninum_Nc-Liverpool_6.2 1

Plasmodium_falciparum_HB3_ 1

Plasmodium_falciparum_Dd2_ 1

Corynebacterium_glutamicum_SCgG2 1

Corynebacterium_glutamicum_SCgG1 1

Thermus_thermophilus_JL-18 1

Paenibacillus_larvae_subsp._larvae_DSM_25430 1

Bacillus_amyloliquefaciens_DSM_7 1

Bacillus_thuringiensis_HD-789 0

Sorangium_cellulosum_So0157-2 1

Burkholderia_phenoliruptrix_BR3459a 1

Burkholderia_sp._CCGE1001 1

Burkholderia_thailandensis_MSMB121 1

Variovorax_paradoxus_B4 1

Variovorax_paradoxus_EPS 1

Nitrosomonas_sp._AL212 1

Methylobacterium_extorquens_DM4 0

Methylobacterium_extorquens_PA1 0

Candidatus_Liberibacter_solanacearum_CLso-ZC1 1

Shewanella_sp._W3-18-1 1

Shewanella_sp._ANA-3 1

Shewanella_baltica_BA175 1

Shewanella_baltica_OS678 1

Shewanella_baltica_OS117 1

Shewanella_baltica_OS223 1

Shewanella_baltica_OS195 1

Shewanella_baltica_OS155 1

Shewanella_sp._MR-7 1

Shewanella_putrefaciens_200 1

Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1

Alteromonas_macleodii_str._'Ionian_Sea_U8' 1

Alteromonas_macleodii_str._'Ionian_Sea_U7' 1

Alteromonas_macleodii_str._'Ionian_Sea_U4' 1

Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1

Alteromonas_macleodii_str._'English_Channel_615' 1

Alteromonas_macleodii_AltDE1 1

Morganella_morganii_subsp._morganii_KT 1

Serratia_marcescens_FGI94 1

Serratia_liquefaciens_ATCC_27592 1

Pantoea_ananatis_LMG_5342 1

Pantoea_ananatis_AJ13355 1

Klebsiella_pneumoniae_JM45 1

Pseudomonas_stutzeri_DSM_4166 1

Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1

Pseudomonas_resinovorans_NBRC_106553 1

Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1

Caldisphaera_lagunensis_DSM_15908 2

Aeropyrum_camini_SY1_=_JCM_12091 2

Sulfolobus_islandicus_LAL14/1 2

Sulfolobus_islandicus_REY15A 2

Sulfolobus_islandicus_HVE10/4 2

Sulfolobus_islandicus_Y.G.57.14 2

Sulfolobus_islandicus_L.S.2.15 2

Sulfolobus_islandicus_M.16.27 2

Sulfolobus_islandicus_M.14.25 2

Sulfolobus_islandicus_M.16.4 2

Sulfolobus_islandicus_L.D.8.5 2

Sulfolobus_solfataricus_98/2 2

Sulfolobus_acidocaldarius_SUSAZ 2

Sulfolobus_acidocaldarius_Ron12/I 2

Sulfolobus_acidocaldarius_N8 2

Methanomethylovorans_hollandica_DSM_15978 2

Methanolobus_psychrophilus_R15 1

Methanosarcina_mazei_Tuc01 1

Methanoregula_formicica_Methanoregula_formicicum_SMSP 2

Halovivax_ruber_XH-70 1

Natronococcus_occultus_SP4 1

Natronobacterium_gregoryi_SP2 1

Haloarcula_hispanica_N601 1

Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 3

Macaca_mulatta_69_1 (Rhesus monkey) 3

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 2

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 4

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 0

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 3

Vicugna_pacos_69_1 (Alpaca) 0

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_69_1 (Giant panda) 2

Canis_familiaris_69_3.1 (Dog) 2

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 3

Myotis_lucifugus_69_2.0 (Little brown bat) 3

Pteropus_vampyrus_69_1 (Large flying fox) 1

Sorex_araneus_69_1 (European shrew) 1

Erinaceus_europaeus_69 (Western European hedgehog) 0

Procavia_capensis_69_1 (Cape rock hyrax) 2

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 0

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 2

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 2

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 2

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_69_2.0 (Green anole) 3

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 2

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 1

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 2

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 2

Ciona_intestinalis_69 (Vase tunicate) 1

Drosophila_melanogaster_69_5 (Fruit fly) 2

Caenorhabditis_elegans_69_215 (Roundworm) 3

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 2

Arabidopsis_thaliana_10 (Thale cress) 4

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 8

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

Loa_loa_v3.3_(Request) (Eye worm) 2

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 0

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 3

Moniliophthora_perniciosa_FA553__(Genome_survey) 1

Encephalitozoon_intestinalis__(endoparasite) 1

Encephalitozoon_cuniculi_(endoparasite) 2

Malus_x_domestica_(Duplicate) (Apple) 2

Ricinus_communis__(Early_assembly) (Castor bean) 2

Nicotiana_benthamiana_0.4.4_(Early_draft) 4

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 5

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 6

Phoenix_dactylifera__(Early_draft) (Date palm) 5

NCBI_plasmid_sequences_(Plasmids) 11

Protein_Data_Bank_(all_PDB_sequenc) 15

Core_Eukaryotic_Genes_458_(CEGMA) 6

TargetDB__(Targets) 19

Protozoadb_2010_08_(Protozoadb) 155

NCBI_viral_sequences_(Viral) 285

UniProt__viral_sequences_(Viral) 428

STRING_v9.0.5_(STRING) 820

NCBI_2017_08_genome 4802

PDB_chains_(SCOP_1.75)_(PDB) 1

Uniprot_2018_03_genome 53130

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Domain combinations for _gap_,53098,56672 superfamilies in groups of genomes