SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - _gap_,53300,_gap_

Domain combinations for _gap_,53300,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53300 - vWA-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   57
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_76_3.1   (Western gorilla)   27
Pongo_abelii_76_2   (Sumatran orangutan)   17
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   18
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   32
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33
Otolemur_garnettii_76_3   (Small-eared galago)   19
Microcebus_murinus_76_1   (Gray mouse lemur)   18
Rattus_norvegicus_76_5.0   (Norway rat)   26
Mus_musculus_76_38   (House mouse)   43
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   37
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   19
Cavia_porcellus_76_3   (Domestic guinea pig)   18
Oryctolagus_cuniculus_76_2   (Rabbit)   20
Ochotona_princeps_76   (American pika)   16
Tupaia_belangeri_76   (Northern tree shrew)   15
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   23
Ovis_aries_76_3.1   (Sheep)   25
Vicugna_pacos_76_1   (Alpaca)   9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_76_1.0   (Domestic ferret)   22
Ailuropoda_melanoleuca_76_1   (Giant panda)   18
Canis_familiaris_76_3.1   (Dog)   27
Felis_catus_76_6.2   (Domestic cat)   20
Equus_caballus_76_2   (Horse)   26
Myotis_lucifugus_76_2.0   (Little brown bat)   20
Pteropus_vampyrus_76_1   (Large flying fox)   20
Sorex_araneus_76_1   (European shrew)   13
Erinaceus_europaeus_76   (Western European hedgehog)   16
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   21
Echinops_telfairi_76   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   22
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   23
Ornithorhynchus_anatinus_76_5   (Platypus)   15
Saccoglossus_kowalevskii_v3.0 32
Petromyzon_marinus_76_7.0   (Sea lamprey)   8
Meleagris_gallopavo_76_2   (Turkey)   14
Gallus_gallus_76_4   (Chicken)   14
Anas_platyrhynchos_76_1.0   (Mallard)   8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   11
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16
Anolis_carolinensis_76_2.0   (Green anole)   24
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   22
Latimeria_chalumnae_76_1   (Coelacanth)   19
Lepisosteus_oculatus_76   (Spotted gar)   28
Gadus_morhua_76_1   (Atlantic cod)   24
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   28
Takifugu_rubripes_76_4   (Torafugu)   96
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27
Oryzias_latipes_76_1   (Japanese medaka)   17
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   24
Poecilia_formosa_76   (Amazon molly)   24
Oreochromis_niloticus_76_1.0   (Nile tilapia)   40
Astyanax_mexicanus_76   (Mexican tetra)   22
Danio_rerio_76_9   (Zebrafish)   37
Oikopleura_dioica 19
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_76   (Vase tunicate)   16
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   22
Adineta_vaga 41
Octopus_bimaculoides_280 24
Crassostrea_gigas_22   (Pacific oyster)   28
Lottia_gigantea_   (Owl limpet)   13
Helobdella_robusta_ 7
Capitella_sp._I_ 30
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 3
Drosophila_persimilis_1.3 3
Drosophila_suzukii 3
Drosophila_yakuba_1.3 3
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   10
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   6
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   14
Strigamia_maritima_22 6
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 7
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 10
Caenorhabditis_elegans_76_235   (Roundworm)   21
Caenorhabditis_briggsae_2 6
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 4
Echinococcus_multilocularis_ 6
Echinococcus_granulosus_ 6
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   15
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 12
Nematostella_vectensis_1.0   (Starlet sea anemone)   21
Hydra_vulgaris 5
Amphimedon_queenslandica 17
Trichoplax_adhaerens_ 8
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 5
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 2
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 2
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 5
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 6
Phanerochaete_chrysosporium_RP-78_2.1 5
Dichomitus_squalens 0
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 1
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 2
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   7
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 10
Dictyostelium_purpureum_ 5
Entamoeba_dispar_1.2 6
Entamoeba_invadens_1.2 9
Entamoeba_histolytica_1 7
Selaginella_moellendorffii_ 10
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   11
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 25
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   12
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   2
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   12
Phaseolus_vulgaris_v186   (French bean)   5
Glycine_max_v109   (Soybean)   12
Cucumis_sativus_v122   (Cucumber)   6
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   12
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   13
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   8
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   7
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   6
Actinidia_chinensis_Hongyang_ 13
Aquilegia_coerulea_v195 4
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   8
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   7
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 14
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 8
Oryza_nivara_22 17
Oryza_brachyantha_22   (Malo sina)   7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17
Oryza_sativa_v193   (Rice)   17
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   11
Zea_mays_subsp._mays_   (Maize)   13
Zea_mays_v181   (Maize)   17
Sorghum_bicolor_   (Sorghum)   8
Musa_balbisiana   (Balbis banana)   7
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 5
Physcomitrella_patens 16
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 7
Bigelowiella_natans_CCMP2755_22 9
Cyanophora_paradoxa_ 1
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 5
Aureococcus_anophagefferens_ 5
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 6
Fragilariopsis_cylindrus 7
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 28
Tetrahymena_thermophila_SB210_1_ 45
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 0
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 5
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 16
Naegleria_gruberi_ 16
Trichomonas_vaginalis_ 17
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 13
Thermobaculum_terrenum_ATCC_BAA-798 2
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 3
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 3
Microcystis_aeruginosa_NIES-843 2
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 3
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 0
Anabaena_sp._90 2
Mycoplasma_penetrans_HF-2 1
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 2
Olsenella_uli_DSM_7084 1
Atopobium_parvulum_DSM_20469 1
Ilumatobacter_coccineus 3
Thermobispora_bispora_DSM_43833 2
Nakamurella_multipartita_DSM_44233 1
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 2
Frankia_sp._EAN1pec 2
Frankia_alni_ACN14a 2
Thermomonospora_curvata_DSM_43183 2
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 3
Streptomyces_coelicolor_A3(2) 3
Streptomyces_sp._PAMC26508 3
Streptomyces_flavogriseus_ATCC_33331 3
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 3
Streptomyces_bingchenggensis_BCW-1 3
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4
Actinosynnema_mirum_DSM_43827 0
Pseudonocardia_dioxanivorans_CB1190 3
Nocardioides_sp._JS614 1
Propionibacterium_acnes_SK137 1
Microlunatus_phosphovorus_NM-1 2
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 2
Actinoplanes_sp._N902-109 3
Actinoplanes_sp._SE50/110 3
Actinoplanes_missouriensis_431 2
Segniliparus_rotundus_DSM_44985 2
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_equi_103S 2
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 2
Mycobacterium_marinum_M 2
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 3
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 1
Corynebacterium_glutamicum_R 1
Corynebacterium_diphtheriae_NCTC_13129 1
Sanguibacter_keddieii_DSM_10542 2
Beutenbergia_cavernae_DSM_12333 1
Intrasporangium_calvum_DSM_43043 1
Brachybacterium_faecium_DSM_4810 1
Xylanimonas_cellulosilytica_DSM_15894 4
Cellulomonas_flavigena_DSM_20109 2
Cellulomonas_fimi_ATCC_484 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_arilaitensis_Re117 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 1
Gardnerella_vaginalis_409-05 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 2
Bifidobacterium_dentium_Bd1 2
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Bifidobacterium_bifidum_S17 1
Bifidobacterium_adolescentis_ATCC_15703 1
Actinomyces_sp._F0330 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2
Anaerolinea_thermophila_UNI-1 2
Herpetosiphon_aurantiacus_DSM_785 8
Roseiflexus_sp._RS-1 8
Roseiflexus_castenholzii_DSM_13941 6
Chloroflexus_sp._MS-G 4
Chloroflexus_sp._Y-400-fl 4
Chloroflexus_aggregans_DSM_9485 4
Chloroflexus_aurantiacus_J-10-fl 4
Truepera_radiovictrix_DSM_17093 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_radiodurans_R1 2
Marinithermus_hydrothermalis_DSM_14884 1
Meiothermus_silvanus_DSM_9946 2
Meiothermus_ruber_DSM_1279 3
Thermus_thermophilus_HB27 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Clostridium_clariflavum_DSM_19732 4
Clostridium_thermocellum_ATCC_27405 1
Ruminococcus_sp. 0
Ruminococcus_albus_7 4
Oscillibacter_valericigenes_Sjm18-20 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Eubacterium_eligens_ATCC_27750 1
Eubacterium_limosum_KIST612 2
Clostridium_sticklandii_DSM_519 2
Filifactor_alocis_ATCC_35896 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 3
Eubacterium_rectale_ATCC_33656 0
Coprococcus_sp._ART55/1 2
Butyrivibrio_proteoclasticus_B316 2
Butyrivibrio_fibrisolvens 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 2
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 1
Clostridium_perfringens_ATCC_13124 1
Mahella_australiensis_50-1_BON 1
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Caldicellulosiruptor_bescii_DSM_6725 1
Tepidanaerobacter_acetatoxydans_Re1 1
Enterococcus_sp._7L76 0
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecium_Aus0004 1
Enterococcus_faecalis_62 1
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_casei_ATCC_334 0
Pediococcus_claussenii_ATCC_BAA-344 0
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_intermedius_JTH08 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_agalactiae_A909 0
Streptococcus_sanguinis_SK36 1
Streptococcus_oralis_Uo5 2
Streptococcus_gordonii_str._Challis_substr._CH1 1
Brevibacillus_brevis_NBRC_100599 5
Paenibacillus_terrae_HPL-003 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Solibacillus_silvestris_StLB046 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 1
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Geobacillus_sp._WCH70 0
Geobacillus_thermodenitrificans_NG80-2 1
Bacillus_pseudofirmus_OF4 1
Macrococcus_caseolyticus_JCSC5402 0
Candidatus_Cloacamonas_acidaminovorans 1
Gemmatimonas_aurantiaca_T-27 2
Melioribacter_roseus_P3M 2
Ignavibacterium_album_JCM_16511 2
Pelodictyon_phaeoclathratiforme_BU-1 2
Chlorobium_chlorochromatii_CaD3 1
Chlorobium_phaeobacteroides_DSM_266 2
Chlorobium_limicola_DSM_245 2
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 1
Chloroherpeton_thalassium_ATCC_35110 4
Prosthecochloris_aestuarii_DSM_271 3
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 4
Niastella_koreensis_GR20-10 3
Chitinophaga_pinensis_DSM_2588 3
Salinibacter_ruber_M8 1
Rhodothermus_marinus_DSM_4252 1
Flexibacter_litoralis_DSM_6794 4
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 2
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 2
Tannerella_forsythia_ATCC_43037 2
Paludibacter_propionicigenes_WB4 2
Odoribacter_splanchnicus_DSM_20712 2
Bacteroides_sp._CF50 1
Prevotella_intermedia_17 1
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 2
Porphyromonas_gingivalis_ATCC_33277 3
Alistipes_finegoldii_DSM_17242 2
Bacteroides_salanitronis_DSM_18170 2
Bacteroides_helcogenes_P_36-108 2
Bacteroides_vulgatus_ATCC_8482 2
Bacteroides_thetaiotaomicron_VPI-5482 2
Bacteroides_fragilis_YCH46 2
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 2
Sphingobacterium_sp._21 1
Fluviicola_taffensis_DSM_16823 1
Owenweeksia_hongkongensis_DSM_17368 2
Zunongwangia_profunda_SM-A87 1
Krokinobacter_sp._4H-3-7-5 2
Gramella_forsetii_KT0803 2
Lacinutrix_sp._5H-3-7-4 2
Maribacter_sp._HTCC2170 1
Robiginitalea_biformata_HTCC2501 2
Croceibacter_atlanticus_HTCC2559 3
Aequorivita_sublithincola_DSM_14238 2
Zobellia_galactanivorans 2
Muricauda_ruestringensis_DSM_13258 2
Cellulophaga_algicola_DSM_14237 2
Cellulophaga_lytica_DSM_7489 1
Flavobacteriaceae_bacterium_3519-10 2
Polaribacter_sp._MED152 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Ornithobacterium_rhinotracheale_DSM_15997 2
Capnocytophaga_canimorsus_Cc5 0
Capnocytophaga_ochracea_DSM_7271 1
Weeksella_virosa_DSM_16922 2
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_columnare_ATCC_49512 2
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Waddlia_chondrophila_WSU_86-1044 2
Candidatus_Protochlamydia_amoebophila_UWE25 2
Parachlamydia_acanthamoebae_UV-7 2
Simkania_negevensis_Z 1
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 5
Planctomyces_brasiliensis_DSM_5305 5
Planctomyces_limnophilus_DSM_3776 5
Rhodopirellula_baltica_SH_1 15
Pirellula_staleyi_DSM_6068 7
Methylacidiphilum_infernorum_V4 2
Coraliomargarita_akajimensis_DSM_45221 4
Opitutus_terrae_PB90-1 4
Akkermansia_muciniphila_ATCC_BAA-835 2
Turneriella_parva_DSM_21527 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 3
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Brachyspira_murdochii_DSM_12563 2
Brachyspira_intermedia_PWS/A 2
Brachyspira_pilosicoli_95/1000 2
Brachyspira_hyodysenteriae_WA1 1
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 1
Treponema_primitia_ZAS-2 3
Treponema_succinifaciens_DSM_2489 1
Spirochaeta_thermophila_DSM_6192 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Denitrovibrio_acetiphilus_DSM_12809 0
Deferribacter_desulfuricans_SSM1 1
Mesotoga_prima_MesG1.Ag.4.2 2
Kosmotoga_olearia_TBF_19.5.1 3
Thermotoga_neapolitana_DSM_4359 1
Persephonella_marina_EX-H1 1
Hydrogenobacter_thermophilus_TK-6 1
Elusimicrobium_minutum_Pei191 1
uncultured_Termite_group_1_bacterium_phylotype_Rs-D17 1
Dictyoglomus_turgidum_DSM_6724 1
Dictyoglomus_thermophilum_H-6-12 1
Candidatus_Chloracidobacterium_thermophilum_B 4
Candidatus_Solibacter_usitatus_Ellin6076 14
Granulicella_tundricola_MP5ACTX9 7
Granulicella_mallensis_MP5ACTX8 10
Candidatus_Koribacter_versatilis_Ellin345 5
Terriglobus_saanensis_SP1PR4 6
Terriglobus_roseus_DSM_18391 5
Acidobacterium_capsulatum_ATCC_51196 4
Thermodesulfovibrio_yellowstonii_DSM_11347 1
Candidatus_Nitrospira_defluvii 1
Sebaldella_termitidis_ATCC_33386 0
Leptotrichia_buccalis_C-1013-b 1
Candidatus_Saccharimonas_aalborgensis 1
Acidithiobacillus_caldus_SM-1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1
Bacteriovorax_marinus_SJ 3
Bdellovibrio_bacteriovorus_HD100 10
Nitratifractor_salsuginis_DSM_16511 1
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Desulfarculus_baarsii_DSM_2075 1
Desulfobacca_acetoxidans_DSM_11109 0
Syntrophus_aciditrophicus_SB 2
Desulfomonile_tiedjei_DSM_6799 3
Syntrophobacter_fumaroxidans_MPOB 3
Desulfobulbus_propionicus_DSM_2032 5
Desulfatibacillum_alkenivorans_AK-01 4
Desulfobacterium_autotrophicum_HRM2 2
Desulfococcus_oleovorans_Hxd3 0
Desulfomicrobium_baculatum_DSM_4028 2
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Geobacter_daltonii_FRC-32 1
Geobacter_uraniireducens_Rf4 1
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 1
Pelobacter_carbinolicus_DSM_2380 2
Haliangium_ochraceum_DSM_14365 11
Sorangium_cellulosum_'So_ce_56' 27
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 18
Corallococcus_coralloides_DSM_2259 12
Myxococcus_xanthus_DK_1622 11
Myxococcus_fulvus_HW-1 12
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 3
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 3
Pseudogulbenkiania_sp._NH8B 0
Laribacter_hongkongensis_HLHK9 0
Chromobacterium_violaceum_ATCC_12472 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2
beta_proteobacterium_CB 1
Methylibium_petroleiphilum_PM1 2
Thiomonas_intermedia_K12 1
Rubrivivax_gelatinosus_IL144 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 3
Cupriavidus_taiwanensis_LMG_19424 4
Cupriavidus_necator_N-1 3
Ralstonia_eutropha_H16 4
Ralstonia_pickettii_12D 1
Burkholderia_sp._RPE64 1
Alicycliphilus_denitrificans_K601 1
Ramlibacter_tataouinensis_TTB310 3
Polaromonas_sp._JS666 2
Polaromonas_naphthalenivorans_CJ2 2
Variovorax_paradoxus_S110 2
Acidovorax_sp._KKS102 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 0
Herminiimonas_arsenicoxydans 0
Pusillimonas_sp._T7-7 1
Taylorella_asinigenitalis_MCE3 1
Taylorella_equigenitalis_MCE9 1
Bordetella_petrii_DSM_12804 1
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 0
Nitrosospira_multiformis_ATCC_25196 1
Methylotenera_versatilis_301 0
Methylotenera_mobilis_JLW8 0
Methylovorus_sp._MP688 0
Methylovorus_glucosetrophus_SIP3-4 0
Magnetococcus_marinus_MC-1 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_sp._K31 2
Caulobacter_crescentus_NA1000 2
Caulobacter_segnis_ATCC_21756 2
Phenylobacterium_zucineum_HLK1 1
Novosphingobium_sp._PP1Y 1
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 1
Maricaulis_maris_MCS10 4
Hirschia_baltica_ATCC_49814 2
Dinoroseobacter_shibae_DFL_12 2
Phaeobacter_gallaeciensis_2.10 1
Jannaschia_sp._CCS1 2
Ruegeria_sp._TM1040 1
Ruegeria_pomeroyi_DSS-3 1
Roseobacter_litoralis_Och_149 2
Roseobacter_denitrificans_OCh_114 3
Rhodobacter_sphaeroides_ATCC_17029 3
Rhodobacter_capsulatus_SB_1003 2
Paracoccus_denitrificans_PD1222 1
Tistrella_mobilis_KA081020-065 1
Magnetospirillum_magneticum_AMB-1 2
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 1
Azospirillum_brasilense_Sp245 3
Gluconacetobacter_diazotrophicus_PAl_5 1
Polymorphum_gilvum_SL003B-26A1 2
Micavibrio_aeruginosavorus_ARL-13 1
Starkeya_novella_DSM_506 1
Xanthobacter_autotrophicus_Py2 1
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_chloromethanicum_CM4 2
Methylobacterium_extorquens_AM1 3
Methylobacterium_sp._4-46 3
Methylobacterium_populi_BJ001 3
Methylobacterium_nodulans_ORS_2060 2
Methylobacterium_radiotolerans_JCM_2831 5
Parvibaculum_lavamentivorans_DS-1 1
Ochrobactrum_anthropi_ATCC_49188 2
Sinorhizobium_fredii_NGR234 2
Rhizobium_etli_CIAT_652 2
Rhizobium_leguminosarum_bv._viciae_3841 3
Agrobacterium_radiobacter_K84 1
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 4
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 4
Mesorhizobium_loti_MAFF303099 3
Methylocella_silvestris_BL2 1
Pelagibacterium_halotolerans_B2 1
Hyphomicrobium_sp._MC1 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 2
Bradyrhizobium_sp._ORS_278 1
Methylocystis_sp._SC2 1
Saccharophagus_degradans_2-40 3
Teredinibacter_turnerae_T7901 4
Cellvibrio_japonicus_Ueda107 1
Pasteurella_multocida_subsp._multocida_str._3480 1
Haemophilus_ducreyi_35000HP 1
Haemophilus_parainfluenzae_T3T1 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1
Oceanimonas_sp._GK1 0
Aeromonas_veronii_B565 2
Aeromonas_salmonicida_subsp._salmonicida_A449 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Aliivibrio_salmonicida_LFI1238 0
Vibrio_fischeri_MJ11 3
Vibrio_sp._Ex25 2
Vibrio_harveyi_ATCC_BAA-1116 0
Vibrio_parahaemolyticus_RIMD_2210633 3
Vibrio_splendidus_LGP32 2
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 3
Psychromonas_ingrahamii_37 1
Psychromonas_sp._CNPT3 3
Ferrimonas_balearica_DSM_9799 0
Shewanella_piezotolerans_WP3 4
Shewanella_loihica_PV-4 3
Shewanella_halifaxensis_HAW-EB4 3
Shewanella_sediminis_HAW-EB3 2
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 2
Shewanella_oneidensis_MR-1 4
Shewanella_baltica_OS185 4
Shewanella_woodyi_ATCC_51908 4
Shewanella_sp._MR-4 5
Shewanella_amazonensis_SB2B 3
Shewanella_violacea_DSS12 5
Shewanella_frigidimarina_NCIMB_400 3
Shewanella_putrefaciens_CN-32 3
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 2
Pseudoalteromonas_haloplanktis_TAC125 2
Glaciecola_sp._4H-3-7+YE-5 2
Glaciecola_nitratireducens_FR1064 2
Marinobacter_adhaerens_HP15 2
Marinobacter_sp._BSs20148 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 2
Marinobacter_aquaeolei_VT8 2
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Kangiella_koreensis_DSM_16069 3
Hahella_chejuensis_KCTC_2396 5
Alcanivorax_borkumensis_SK2 1
Marinomonas_sp._MWYL1 1
Methylomicrobium_alcaliphilum 2
Methylomonas_methanica_MC09 2
Methylococcus_capsulatus_str._Bath 1
Rhodanobacter_denitrificans 1
Frateuria_aurantia_DSM_6220 1
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Xylella_fastidiosa_M23 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Halothiobacillus_neapolitanus_c2 1
Alkalilimnicola_ehrlichii_MLHE-1 1
Allochromatium_vinosum_DSM_180 4
Thiocystis_violascens_DSM_198 4
Nitrosococcus_watsonii_C-113 1
Legionella_longbeachae_NSW150 1
Legionella_pneumophila_str._Corby 1
gamma_proteobacterium_HdN1 4
Xenorhabdus_bovienii_SS-2004 1
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Serratia_sp._ATCC_39006 0
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Enterobacteriaceae_bacterium_strain_FGI_57 0
Escherichia_fergusonii_ATCC_35469 1
Enterobacter_sp._638 1
Azotobacter_vinelandii_DJ 2
Pseudomonas_sp._TKP 2
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 2
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 2
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 2
Pseudomonas_mendocina_ymp 2
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Psychrobacter_sp._PRwf-1 1
Acinetobacter_oleivorans_DR1 0
Methylophaga_sp._JAM1 1
Metallosphaera_sedula_DSM_5348 1
Sulfolobus_solfataricus_P2 1
Methanocella_arvoryzae_MRE50 0
Methanocella_conradii_HZ254 0
Methanocella_paludicola_SANAE 1
Methanosaeta_harundinacea_6Ac 3
Methanosaeta_thermophila_PT 0
Methanosaeta_concilii_GP6 1
Methanococcoides_burtonii_DSM_6242 0
Methanosarcina_acetivorans_C2A 0
Methanoregula_boonei_6A8 0
Methanospirillum_hungatei_JF-1 0
Methanoplanus_petrolearius_DSM_11571 0
Methanoculleus_bourgensis_MS2 0
Methanoculleus_marisnigri_JR1 0
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Thermococcus_barophilus_MP 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Halorubrum_lacusprofundi_ATCC_49239 2
Halorhabdus_utahensis_DSM_12940 2
Haloarcula_marismortui_ATCC_43049 0
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 1
Acholeplasma_laidlawii_PG-8A 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   21
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   14
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   14
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Chroococcidiopsis_thermalis_PCC_7203 3
Chamaesiphon_minutus_PCC_6605 1
Dactylococcopsis_salina_PCC_8305 2
Synechococcus_sp._PCC_7002 1
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 4
Arthrospira_platensis_NIES-39 4
Cyanothece_sp._PCC_7822 3
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 2
Anabaena_cylindrica_PCC_7122 2
Gordonibacter_pamelaeae_7-10-1-b 1
Adlercreutzia_equolifaciens_DSM_19450 1
Frankia_sp._EuI1c 2
Streptomyces_albus_J1074 2
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_davawensis_JCM_4913 3
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 3
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 4
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_orientalis_HCCB10007 0
Propionibacterium_avidum_44067 1
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Propionibacterium_acidipropionici_ATCC_4875 1
Actinoplanes_friuliensis_DSM_7358 2
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 1
Mycobacterium_abscessus_subsp._bolletii_50594 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_kansasii_ATCC_12478 3
Corynebacterium_maris_DSM_45190 1
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_urealyticum_DSM_7111 2
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_pseudotuberculosis_258 1
Corynebacterium_pseudotuberculosis_FRC41 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_diphtheriae_BH8 1
Corynebacterium_diphtheriae_INCA_402 1
Corynebacterium_diphtheriae_VA01 2
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 2
Corynebacterium_diphtheriae_HC01 2
Corynebacterium_diphtheriae_241 2
Corynebacterium_diphtheriae_CDCE_8392 2
Gardnerella_vaginalis_HMP9231 1
Gardnerella_vaginalis_ATCC_14019 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 2
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 2
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 2
Bifidobacterium_animalis_subsp._lactis_Bl12 3
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 2
Bifidobacterium_animalis_subsp._lactis_BLC1 3
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 3
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 2
Bifidobacterium_animalis_subsp._lactis_DSM_10140 2
Bifidobacterium_animalis_subsp._lactis_BB-12 3
Bifidobacterium_animalis_subsp._lactis_AD011 3
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_asteroides_PRL2011 1
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_odontolyticus_ATCC_17982 2
Actinomyces_viscosus_C505 1
Chthonomonas_calidirosea_T49 2
Deinococcus_peraridilitoris_DSM_19664 1
Thermus_oshimai_JL-2 1
Thermus_thermophilus_JL-18 1
Thermus_thermophilus_SG0.5JP17-16 1
Thermus_thermophilus_HB8 1
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 2
Desulfosporosinus_meridiei_DSM_13257 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 0
Coprococcus_catus_GD/7 1
Clostridium_sp._SY8519 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 1
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_botulinum_E3_str._Alaska_E43 0
Carnobacterium_maltaromaticum_LMA28 0
Enterococcus_mundtii_QU_25 0
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecium_Aus0085 1
Enterococcus_faecium_NRRL_B-2354 1
Enterococcus_faecium_DO 1
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Leuconostoc_carnosum_JB16 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 1
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_oligofermentans_AS_1.3089 1
Streptococcus_pyogenes_MGAS1882 1
Streptococcus_pyogenes_MGAS15252 1
Streptococcus_pyogenes_MGAS10750 1
Streptococcus_pyogenes_MGAS10270 1
Streptococcus_pyogenes_MGAS2096 1
Streptococcus_pyogenes_MGAS9429 1
Streptococcus_pyogenes_MGAS6180 1
Streptococcus_pyogenes_NZ131 1
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_TIGR4 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_TL13 2
Streptococcus_suis_SC070731 1
Streptococcus_suis_S735 1
Streptococcus_suis_ST3 1
Streptococcus_suis_SS12 1
Streptococcus_suis_D12 2
Streptococcus_suis_A7 1
Streptococcus_suis_JS14 1
Streptococcus_suis_GZ1 1
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 1
Thermobacillus_composti_KWC4 1
Paenibacillus_sp._Y412MC10 2
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y4.1MC1 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Bacillus_infantis_NRRL_B-14911 3
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_cereus_E33L 1
Chlorobium_phaeobacteroides_BS1 2
Salinibacter_ruber_DSM_13855 1
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 1
Prevotella_sp._oral_taxon_299_str._F0039 2
Prevotella_dentalis_DSM_3688 2
Porphyromonas_gingivalis_TDC60 2
Porphyromonas_gingivalis_W83 2
Alistipes_shahii_WAL_8301 2
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 2
Bacteroides_fragilis_NCTC_9343 2
Nonlabens_dokdonensis_DSW-6 2
Psychroflexus_torquis_ATCC_700755 3
Riemerella_anatipestifer_RA-CH-2 2
Riemerella_anatipestifer_RA-CH-1 2
Riemerella_anatipestifer_RA-GD 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Singulisphaera_acidiphila_DSM_18658 10
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 3
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3
Brachyspira_pilosicoli_WesB 2
Brachyspira_pilosicoli_P43/6/78 2
Spirochaeta_thermophila_DSM_6578 1
Hydrogenobacter_thermophilus_TK-6 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1
Bdellovibrio_exovorus_JSS 3
Bdellovibrio_bacteriovorus_str._Tiberius 9
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Geobacter_sulfurreducens_PCA 0
Sorangium_cellulosum_So0157-2 22
Myxococcus_stipitatus_DSM_14675 15
Ralstonia_pickettii_12J 1
Burkholderia_sp._YI23 1
Alicycliphilus_denitrificans_BC 1
Variovorax_paradoxus_B4 2
Variovorax_paradoxus_EPS 2
Taylorella_asinigenitalis_14/45 1
Taylorella_equigenitalis_14/56 1
Taylorella_equigenitalis_ATCC_35865 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_MO149 1
Bordetella_bronchiseptica_253 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Nitrosomonas_sp._AL212 1
Caulobacter_crescentus_CB15 2
Phaeobacter_gallaeciensis_DSM_17395 1
Phaeobacter_gallaeciensis_DSM_26640 1
Leisingera_methylohalidivorans_DSM_14336 1
Octadecabacter_antarcticus_307 2
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_KD131 3
Rhodobacter_sphaeroides_ATCC_17025 3
Rhodobacter_sphaeroides_2.4.1 3
Paracoccus_aminophilus_JCM_7686 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 3
Rhodospirillum_rubrum_ATCC_11170 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Micavibrio_aeruginosavorus_EPB 1
Rickettsia_bellii_RML369-C 1
Methylobacterium_extorquens_DM4 3
Methylobacterium_extorquens_PA1 2
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 2
Rhizobium_etli_CFN_42 2
Rhizobium_etli_bv._mimosae_str._Mim1 2
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 3
Rhizobium_leguminosarum_bv._trifolii_WSM1325 3
Mesorhizobium_australicum_WSM2073 3
Hyphomicrobium_nitrativorans_NL23 2
Hyphomicrobium_denitrificans_1NES1 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 2
Simiduia_agarivorans_SA1_=_DSM_21679 3
Pasteurella_multocida_36950 1
Pasteurella_multocida_subsp._multocida_str._HN06 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Actinobacillus_suis_H91-0380 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 2
Vibrio_sp._EJY3 2
Vibrio_parahaemolyticus_BB22OP 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_vulnificus_CMCP6 4
Vibrio_vulnificus_YJ016 3
Shewanella_sp._W3-18-1 3
Shewanella_sp._ANA-3 4
Shewanella_baltica_BA175 3
Shewanella_baltica_OS678 4
Shewanella_baltica_OS117 3
Shewanella_baltica_OS223 4
Shewanella_baltica_OS195 4
Shewanella_baltica_OS155 3
Shewanella_sp._MR-7 4
Shewanella_putrefaciens_200 3
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2
Alteromonas_macleodii_str._'Black_Sea_11' 2
Alteromonas_macleodii_ATCC_27126 2
Alcanivorax_dieselolei_B5 2
Thalassolituus_oleivorans_MIL-1 3
Stenotrophomonas_maltophilia_JV3 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Thioflavicoccus_mobilis_8321 5
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1
Proteus_mirabilis_BB2000 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_JJ1886 1
Escherichia_coli_APEC_O78 1
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_NA114 1
Escherichia_coli_P12b 1
Escherichia_coli_str._'clone_D_i2' 1
Escherichia_coli_str._'clone_D_i14' 1
Escherichia_coli_UM146 1
Escherichia_coli_042 1
Escherichia_coli_IHE3034 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_ED1a 1
Escherichia_coli_IAI39 1
Escherichia_coli_S88 1
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_SE15 1
Escherichia_coli_APEC_O1 1
Escherichia_coli_UTI89 1
Escherichia_coli_HS 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O26:H11_str._11368 1
Escherichia_coli_CFT073 1
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_str._K-12_substr._MDS42 1
Escherichia_coli_BW2952 1
Escherichia_coli_str._K-12_substr._MG1655 1
Escherichia_coli_str._K-12_substr._W3110 1
Azotobacter_vinelandii_CA6 2
Azotobacter_vinelandii_CA 2
Pseudomonas_denitrificans_ATCC_13867 2
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 3
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 2
Pseudomonas_monteilii_SB3078 2
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 2
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 2
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 2
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 2
Pseudomonas_fluorescens_A506 2
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 2
Pseudomonas_resinovorans_NBRC_106553 2
Pseudomonas_mendocina_NK-01 2
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Acinetobacter_genomosp._13TU__RUH2624 1
Acinetobacter_sp.__SH024 1
Acinetobacter_calcoaceticus_ruh2202 1
Acinetobacter_baumannii_ZW85-1 0
Acinetobacter_baumannii_TYTH-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB0715 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii__ATCC_19606 1
Acinetobacter_baumannii_AB307-0294 1
Acinetobacter_baumannii_AYE 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_baumannii_AB0057 1
Acinetobacter_junii__SH205 1
Acinetobacter_johnsonii__SH046 0
Acinetobacter_lwoffii__SH145 1
Methylophaga_sp._JAM7 3
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Methanolobus_psychrophilus_R15 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0
Halorhabdus_tiamatea_SARL4B 3
Natronomonas_moolapensis_8.8.11 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   25
Pan_troglodytes_69_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_69_3.1   (Western gorilla)   20
Pongo_abelii_69_2   (Sumatran orangutan)   17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18
Macaca_mulatta_69_1   (Rhesus monkey)   18
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   18
Otolemur_garnettii_69_3   (Small-eared galago)   19
Microcebus_murinus_69_1   (Gray mouse lemur)   18
Rattus_norvegicus_69_3.4   (Norway rat)   20
Mus_musculus_69_38   (House mouse)   23
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   24
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   21
Ochotona_princeps_69   (American pika)   16
Tupaia_belangeri_69   (Northern tree shrew)   15
Sus_scrofa_69_10.2   (Pig)   16
Bos_taurus_69_3.1   (Cattle)   20
Vicugna_pacos_69_1   (Alpaca)   9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   19
Ailuropoda_melanoleuca_69_1   (Giant panda)   17
Canis_familiaris_69_3.1   (Dog)   18
Felis_catus_69   (Domestic cat)   13
Equus_caballus_69_2   (Horse)   22
Myotis_lucifugus_69_2.0   (Little brown bat)   20
Pteropus_vampyrus_69_1   (Large flying fox)   20
Sorex_araneus_69_1   (European shrew)   13
Erinaceus_europaeus_69   (Western European hedgehog)   16
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   17
Echinops_telfairi_69   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   17
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22
Ornithorhynchus_anatinus_69_5   (Platypus)   13
Petromyzon_marinus_69_7.0   (Sea lamprey)   8
Meleagris_gallopavo_69_2   (Turkey)   13
Gallus_gallus_69_2   (Chicken)   10
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12
Anolis_carolinensis_69_2.0   (Green anole)   19
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_69_1   (Coelacanth)   17
Gadus_morhua_69_1   (Atlantic cod)   17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   17
Takifugu_rubripes_69_4   (Torafugu)   19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18
Oryzias_latipes_69_1   (Japanese medaka)   16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   24
Oreochromis_niloticus_69_1.0   (Nile tilapia)   27
Danio_rerio_69_9   (Zebrafish)   25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_69   (Vase tunicate)   14
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   9
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   75
Homo_sapiens__(NCBI_version)   (Human)   25
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   21
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   12
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Acholeplasma_laidlawii_PG-8A_(duplicate) 1
NCBI_plasmid_sequences_(Plasmids) 33
UniProt__viral_sequences_(Viral) 9
TargetDB__(Targets) 55
Protozoadb_2010_08_(Protozoadb) 74
Protein_Data_Bank_(all_PDB_sequenc) 6
STRING_v9.0.5_(STRING) 1551
NCBI_viral_sequences_(Viral) 17
Uniprot_2018_03_genome 137460
NCBI_2017_08_genome 53069
Core_Eukaryotic_Genes_458_(CEGMA) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.