SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,53448,50370,50370 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53448 - Nucleotide-diphospho-sugar transferases
50370 - Ricin B-like lectins
50370 - Ricin B-like lectins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Drosophila_grimshawi_1.3 1
Drosophila_yakuba_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Caenorhabditis_remanei_ 1
Caenorhabditis_briggsae_2 1
Proterospongia_sp._ATCC_50818_ 2
Perkinsus_marinus_ATCC_50983_ 0

Longest transcript per gene
Genome     Number
Mus_musculus_69_38   (House mouse)   1
Felis_catus_69   (Domestic cat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 9
NCBI_2017_08_genome 23
Uniprot_2018_03_genome 450

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