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  Home > SCOP hierarchy > Domain combination - _gap_,53448,53448,_gap_

Domain combinations for _gap_,53448,53448,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53448 - Nucleotide-diphospho-sugar transferases
53448 - Nucleotide-diphospho-sugar transferases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Rhizomucor_miehei_CAU432_ 1
Catenaria_anguillulae_PL171_v1.0 1
Pinus_taeda   (Loblolly pine)   1
Carica_papaya_   (Papaya)   1
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   1
Oryza_meridionalis_22 0
Musa_balbisiana   (Balbis banana)   2
Bigelowiella_natans_CCMP2755_22 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Fragilariopsis_cylindrus 2
Symbiodinium_minutum_clade_B1_v1.2 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1
Nocardioides_sp._JS614 1
Gordonia_sp._KTR9 1
Rhodococcus_jostii_RHA1 1
Amycolicicoccus_subflavus_DQS3-9A1 1
Mycobacterium_sp._JLS 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Intrasporangium_calvum_DSM_43043 1
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_fimi_ATCC_484 1
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 2
Arthrobacter_sp._Rue61a 2
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Clostridium_beijerinckii_NCIMB_8052 0
Paenibacillus_sp._JDR-2 1
Acidithiobacillus_ferrivorans_SS3 0
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Burkholderia_cenocepacia_HI2424 0
Methylobacterium_radiotolerans_JCM_2831 1
Pasteurella_multocida_subsp._multocida_str._3480 1
Pantoea_ananatis_LMG_20103 2
Enterobacter_sp._R4-368 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1

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Strains
Genome     Number
Rhodococcus_pyridinivorans_SB3094 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Burkholderia_cenocepacia_AU_1054 0
Variovorax_paradoxus_B4 0
Pasteurella_multocida_36950 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Pantoea_ananatis_PA13 1
Pantoea_ananatis_AJ13355 2
Pseudomonas_putida_HB3267 1

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Tupaia_belangeri_69   (Northern tree shrew)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Felis_catus_69   (Domestic cat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Gadus_morhua_69_1   (Atlantic cod)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
STRING_v9.0.5_(STRING) 22
Uniprot_2018_03_genome 3368
NCBI_2017_08_genome 706
TargetDB__(Targets) 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.