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  Home > SCOP hierarchy > Domain combination - _gap_,53822,53850,81324,_gap_

Domain combinations for _gap_,53822,53850,81324,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53822 - Periplasmic binding protein-like I
53850 - Periplasmic binding protein-like II
81324 - Voltage-gated potassium channels

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Ochotona_princeps_76   (American pika)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Canis_familiaris_76_3.1   (Dog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 2
Oryza_brachyantha_22   (Malo sina)   1

Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Ochotona_princeps_69   (American pika)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 406
NCBI_2017_08_genome 42

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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