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Domain combinations for _gap_,53822,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53822 - Periplasmic binding protein-like I

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   50
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11
Gorilla_gorilla_76_3.1   (Western gorilla)   21
Pongo_abelii_76_2   (Sumatran orangutan)   15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9
Papio_anubis_76   (Olive baboon)   9
Macaca_mulatta_76_1   (Rhesus monkey)   21
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   17
Otolemur_garnettii_76_3   (Small-eared galago)   14
Microcebus_murinus_76_1   (Gray mouse lemur)   10
Rattus_norvegicus_76_5.0   (Norway rat)   124
Mus_musculus_76_38   (House mouse)   149
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   25
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   9
Ovis_aries_76_3.1   (Sheep)   7
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   11
Ailuropoda_melanoleuca_76_1   (Giant panda)   10
Canis_familiaris_76_3.1   (Dog)   15
Felis_catus_76_6.2   (Domestic cat)   11
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   7
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   5
Procavia_capensis_76_1   (Cape rock hyrax)   11
Loxodonta_africana_76_3   (African savanna elephant)   13
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   20
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_76_5   (Platypus)   25
Saccoglossus_kowalevskii_v3.0 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   11
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   11
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   17
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   139
Latimeria_chalumnae_76_1   (Coelacanth)   49
Lepisosteus_oculatus_76   (Spotted gar)   43
Gadus_morhua_76_1   (Atlantic cod)   38
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   26
Takifugu_rubripes_76_4   (Torafugu)   182
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   38
Oryzias_latipes_76_1   (Japanese medaka)   36
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   21
Poecilia_formosa_76   (Amazon molly)   44
Oreochromis_niloticus_76_1.0   (Nile tilapia)   52
Astyanax_mexicanus_76   (Mexican tetra)   47
Danio_rerio_76_9   (Zebrafish)   92
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8
Adineta_vaga 10
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 5
Capitella_sp._I_ 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   0
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 5
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 2
Drosophila_suzukii 4
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   10
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   7
Strigamia_maritima_22 4
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 5
Caenorhabditis_elegans_76_235   (Roundworm)   9
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   4
Acropora_digitifera_v1.0 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   12
Hydra_vulgaris 19
Amphimedon_queenslandica 17
Trichoplax_adhaerens_ 20
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 2
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 2
Catenaria_anguillulae_PL171_v1.0 11
Allomyces_macrogynus_ATCC_38327_ 21
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 1
Eucalyptus_grandis_v201   (Rose gum)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 2
Chlamydomonas_reinhardtii_4.0 1
Bigelowiella_natans_CCMP2755_22 2
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 10
Trypanosoma_brucei_gambiense_v4.1 5
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Fragilariopsis_cylindrus 7
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 0
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 8
Leptolyngbya_sp._PCC_7376 1
Nostoc_sp._PCC_7120 0
Mycoplasma_bovis_HB0801 2
Mycoplasma_agalactiae_PG2 1
Mycoplasma_pulmonis_UAB_CTIP 1
Catenulispora_acidiphila_DSM_44928 1
Frankia_symbiont_of_Datisca_glomerata 2
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Isoptericola_variabilis_225 1
Rothia_mucilaginosa_DY-18 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Bifidobacterium_bifidum_S17 1
Bifidobacterium_adolescentis_ATCC_15703 1
[Ruminococcus]_obeum 1
Prevotella_ruminicola_23 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Desulfurispirillum_indicum_S5 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Leptospirillum_ferrooxidans_C2-3 1
Desulfarculus_baarsii_DSM_2075 1
Desulfovibrio_piezophilus 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Haliangium_ochraceum_DSM_14365 2
Corallococcus_coralloides_DSM_2259 1
Advenella_kashmirensis_WT001 1
Azospirillum_sp._B510 0
Azorhizobium_caulinodans_ORS_571 1
Agrobacterium_tumefaciens_str._C58 1
Hyphomicrobium_sp._MC1 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Rhodanobacter_denitrificans 1
Halothiobacillus_neapolitanus_c2 1
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Acinetobacter_oleivorans_DR1 1
Acinetobacter_sp._ADP1 1
Nitrosopumilus_maritimus_SCM1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   223
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9
Batrachochytrium_dendrobatidis_JAM81_ 1
Trypanosoma_brucei_Lister_427_v4.1 1
Mycoplasma_bovis_Hubei-1 2
Mycoplasma_bovis_PG45 1
Mycoplasma_agalactiae 2
Frankia_sp._EuI1c 2
Frankia_sp._CcI3 1
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Nocardia_brasiliensis_ATCC_700358 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1
Bifidobacterium_animalis_subsp._lactis_AD011 1
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Leptospirillum_ferriphilum_ML-04 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_desulfuricans_ND132 1
Sorangium_cellulosum_So0157-2 2
Myxococcus_stipitatus_DSM_14675 1
Hyphomicrobium_denitrificans_1NES1 1
Sulfolobus_islandicus_HVE10/4 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   16
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   14
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9
Macaca_mulatta_69_1   (Rhesus monkey)   13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   12
Otolemur_garnettii_69_3   (Small-eared galago)   13
Microcebus_murinus_69_1   (Gray mouse lemur)   10
Rattus_norvegicus_69_3.4   (Norway rat)   76
Mus_musculus_69_38   (House mouse)   131
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   21
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   8
Bos_taurus_69_3.1   (Cattle)   9
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   11
Ailuropoda_melanoleuca_69_1   (Giant panda)   10
Canis_familiaris_69_3.1   (Dog)   14
Felis_catus_69   (Domestic cat)   7
Equus_caballus_69_2   (Horse)   11
Myotis_lucifugus_69_2.0   (Little brown bat)   7
Pteropus_vampyrus_69_1   (Large flying fox)   8
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   5
Procavia_capensis_69_1   (Cape rock hyrax)   11
Loxodonta_africana_69_3   (African savanna elephant)   10
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   16
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_69_5   (Platypus)   23
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   9
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12
Anolis_carolinensis_69_2.0   (Green anole)   15
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   133
Latimeria_chalumnae_69_1   (Coelacanth)   49
Gadus_morhua_69_1   (Atlantic cod)   22
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   20
Takifugu_rubripes_69_4   (Torafugu)   33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   31
Oryzias_latipes_69_1   (Japanese medaka)   31
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   21
Oreochromis_niloticus_69_1.0   (Nile tilapia)   44
Danio_rerio_69_9   (Zebrafish)   70
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   5

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   59
Homo_sapiens__(NCBI_version)   (Human)   22
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   129
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
NCBI_plasmid_sequences_(Plasmids) 3
Protozoadb_2010_08_(Protozoadb) 5
PDB_chains_(SCOP_1.75)_(PDB) 1
STRING_v9.0.5_(STRING) 716
Uniprot_2018_03_genome 30025
NCBI_2017_08_genome 10582
Protein_Data_Bank_(all_PDB_sequenc) 20
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 37
TargetDB__(Targets) 2

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