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Domain combinations for _gap_,54001,_gap_,48371,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54001 - Cysteine proteinases
48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   2
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Saccoglossus_kowalevskii_v3.0 1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Oryzias_latipes_76_1   (Japanese medaka)   0
Capitella_sp._I_ 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Drosophila_pseudoobscura_2.13 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Capsaspora_owczarzaki_ATCC_30864_ 1
Pythium_ultimum_v1.7-2 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Oryzias_latipes_69_1   (Japanese medaka)   0

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Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
STRING_v9.0.5_(STRING) 12
Uniprot_2018_03_genome 1716
NCBI_2017_08_genome 266

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