SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,54160,63748,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54160 - Chromo domain-like
63748 - Tudor/PWWP/MBT

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Strigamia_maritima_22 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Acropora_digitifera_v1.0 0
Pythium_irregulare_DAOM_BR486_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1

Longest transcript per gene
Genome     Number
Ciona_intestinalis_69   (Vase tunicate)   0

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 36
NCBI_2017_08_genome 8

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]