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Domain combinations for _gap_,54171,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54171 - DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   4
Macaca_mulatta_76_1   (Rhesus monkey)   5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   3
Mus_musculus_76_38   (House mouse)   5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   2
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   6
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 1
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 1
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 61
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 0
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 0
Selaginella_moellendorffii_ 15
Pinus_taeda   (Loblolly pine)   59
Picea_abies   (Norway spruce)   37
Eucalyptus_grandis_v201   (Rose gum)   79
Theobroma_cacao_B97-61/B2_v1   (Cacao)   63
Gossypium_raimondii_v221 158
Citrus_clementina_v165 59
Citrus_sinensis_v154   (Sweet orange)   54
Thellungiella_halophila_v173 64
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   118
Capsella_rubella_v183 67
Arabidopsis_lyrata_   (Lyrate rockcress)   61
Arabidopsis_thaliana_10   (Thale cress)   81
Carica_papaya_   (Papaya)   37
Medicago_truncatula_   (Barrel medic)   94
Phaseolus_vulgaris_v186   (French bean)   74
Glycine_max_v109   (Soybean)   125
Cucumis_sativus_v122   (Cucumber)   60
Fragaria_vesca_   (Wild strawberry)   56
Malus_domestica_v196   (Apple)   120
Prunus_persica_v139   (Peach)   58
Linum_usitatissimum_v200   (Flax)   88
Manihot_esculenta_v147   (Cassava)   83
Populus_trichocarpa_v156   (Black cottonwood)   99
Vitis_vinifera_   (Wine grape)   40
Mimulus_guttatus_v140   (Spotted monkey flower)   55
Solanum_lycopersicum_v.2.3   (Tomato)   66
Solanum_tuberosum_   (Potato)   96
Actinidia_chinensis_Hongyang_ 87
Aquilegia_coerulea_v195 48
Triticum_urartu_22 20
Triticum_aestivum_22   (Bread wheat)   73
Aegilops_tauschii_22 35
Brachypodium_distachyon_   (Stiff brome)   52
Oryza_barthii_22   (African wild rice)   66
Oryza_meridionalis_22 72
Oryza_glumaepatula_22 93
Oryza_glaberrima   (African rice)   59
Oryza_punctata_22 78
Oryza_nivara_22 91
Oryza_brachyantha_22   (Malo sina)   42
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   107
Oryza_sativa_v193   (Rice)   106
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   76
Panicum_virgatum_v202   (Switchgrass)   131
Setaria_italica_v164   (Foxtail millet)   98
Zea_mays_subsp._mays_   (Maize)   108
Zea_mays_v181   (Maize)   124
Sorghum_bicolor_   (Sorghum)   79
Musa_balbisiana   (Balbis banana)   135
Musa_acuminata_22   (Wild Malaysian banana)   91
Amborella_trichopoda_22 36
Physcomitrella_patens 34
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 11
Volvox_carteri_v199 9
Chlamydomonas_reinhardtii_4.0 7
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 5
Micromonas_pusilla_CCMP1545_v3.0 6
Bigelowiella_natans_CCMP2755_22 5
Cyanophora_paradoxa_ 1
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 8
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 40
Staphylococcus_haemolyticus_JCSC1435 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   61
Hordeum_vulgare_22   (Domesticated barley)   47
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   74
Staphylococcus_aureus_subsp._aureus_ED133 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   3
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Arabidopsis_thaliana_10   (Thale cress)   61

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5
Lotus_japonicus__(Early_assembly) 46
Malus_x_domestica_(Duplicate)   (Apple)   120
Ricinus_communis__(Early_assembly)   (Castor bean)   46
Nicotiana_benthamiana_0.4.4_(Early_draft) 115
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   67
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   66
Phoenix_dactylifera__(Early_draft)   (Date palm)   8
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 603
Uniprot_2018_03_genome 48505
NCBI_2017_08_genome 9596

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