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Home > SCOP hierarchy > Domain combination - _gap_,54236,50729,_gap_

Domain combinations for _gap_,54236,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 11

Pan_troglodytes_76_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 3

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 3

Papio_anubis_76 (Olive baboon) 3

Macaca_mulatta_76_1 (Rhesus monkey) 7

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 7

Otolemur_garnettii_76_3 (Small-eared galago) 2

Microcebus_murinus_76_1 (Gray mouse lemur) 2

Rattus_norvegicus_76_5.0 (Norway rat) 2

Mus_musculus_76_38 (House mouse) 5

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_76_2 (Rabbit) 2

Ochotona_princeps_76 (American pika) 3

Tupaia_belangeri_76 (Northern tree shrew) 2

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 2

Ovis_aries_76_3.1 (Sheep) 2

Vicugna_pacos_76_1 (Alpaca) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_76_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 4

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 2

Myotis_lucifugus_76_2.0 (Little brown bat) 2

Pteropus_vampyrus_76_1 (Large flying fox) 2

Sorex_araneus_76_1 (European shrew) 2

Erinaceus_europaeus_76 (Western European hedgehog) 2

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 3

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 2

Macropus_eugenii_76_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Saccoglossus_kowalevskii_v3.0 0

Meleagris_gallopavo_76_2 (Turkey) 3

Gallus_gallus_76_4 (Chicken) 2

Anas_platyrhynchos_76_1.0 (Mallard) 2

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 2

Ficedula_albicollis_76_1.0 (Collared flycatcher) 2

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_76_2.0 (Green anole) 2

Xenopus_laevis_ (African clawed frog) 3

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 3

Latimeria_chalumnae_76_1 (Coelacanth) 1

Lepisosteus_oculatus_76 (Spotted gar) 4

Gadus_morhua_76_1 (Atlantic cod) 1

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 6

Takifugu_rubripes_76_4 (Torafugu) 9

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 3

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 4

Oreochromis_niloticus_76_1.0 (Nile tilapia) 7

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 5

Oikopleura_dioica 1

Ciona_intestinalis_76 (Vase tunicate) 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 0

Octopus_bimaculoides_280 1

Crassostrea_gigas_22 (Pacific oyster) 1

Helobdella_robusta_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Drosophila_grimshawi_1.3 1

Drosophila_willistoni_1.3 1

Drosophila_suzukii 1

Drosophila_yakuba_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_erecta_1.3 1

Drosophila_ananassae_1.3 1

Drosophila_mojavensis_1.3 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Strigamia_maritima_22 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Meloidogyne_incognita_ (Southern root-knot nematode) 2

Meloidogyne_hapla_ 1

Onchocerca_volvulus_22 1

Caenorhabditis_japonica_ 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 3

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 1

Hymenolepis_microstoma_ 2

Echinococcus_multilocularis_ 2

Echinococcus_granulosus_ 2

Taenia_solium_ (Pork tapeworm) 1

Mnemiopsis_leidyi (Sea walnut) 1

Amphimedon_queenslandica 0

Trichoplax_adhaerens_ 1

Monosiga_brevicollis_ 0

Capsaspora_owczarzaki_ATCC_30864_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 2

Mortierella_verticillata_NRRL_6337_ 1

Rhizopus_oryzae_RA_99-880_ 1

Mucor_circinelloides_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 1

Ustilago_maydis_ 1

Mixia_osmundae_IAM_14324_v1.0 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Rhodotorula_graminis_WP1_v1.0 1

Microbotryum_violaceum_22 1

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Pisolithus_tinctorius_Marx_270_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Agaricus_bisporus_var._bisporus_ 1

Schizophyllum_commune_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Punctularia_strigosozonata_v1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Fomitiporia_mediterranea_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Wolfiporia_cocos_MD-104_SS10__v1.0 1

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Trametes_versicolor_v1.0 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Neurospora_tetrasperma_ 1

Neurospora_crassa_OR74A_ 1

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Cochliobolus_victoriae_FI3_v1.0 1

Alternaria_brassicicola_ 1

Cochliobolus_lunatus_m118_v2.0 1

Mycosphaerella_graminicola_IPO323_ 1

Septoria_musiva_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Trichophyton_verrucosum_HKI_0517_ 1

Arthroderma_benhamiae_CBS_112371_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Aspergillus_zonatus_v1.0 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Penicillium_chrysogenum_v1.0 1

Aspergillus_acidus_v1.0 1

Aspergillus_fumigatus_Af293 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_oryzae_RIB40_ 1

Aspergillus_niger_22 1

Aspergillus_niger_ATCC_1015_ 1

Aspergillus_clavatus_NRRL_1_ 1

Allomyces_macrogynus_ATCC_38327_ 2

Spizellomyces_punctatus_DAOM_BR117_ 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 3

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 1

Ascaris_suum_Victoria/Ghent_ (Pig roundworm) 1

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 3

Paracoccidioides_brasiliensis_Pb01_ 1

Paracoccidioides_brasiliensis_Pb03_ 1

Ajellomyces_dermatitidis_ER-3_ 1

Histoplasma_capsulatum_H143 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 1

Batrachochytrium_dendrobatidis_JEL423_ 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 2

Macaca_mulatta_69_1 (Rhesus monkey) 2

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Microcebus_murinus_69_1 (Gray mouse lemur) 2

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 2

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_69_2 (Rabbit) 2

Ochotona_princeps_69 (American pika) 3

Tupaia_belangeri_69 (Northern tree shrew) 2

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 2

Vicugna_pacos_69_1 (Alpaca) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 3

Felis_catus_69 (Domestic cat) 2

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 2

Pteropus_vampyrus_69_1 (Large flying fox) 2

Sorex_araneus_69_1 (European shrew) 2

Erinaceus_europaeus_69 (Western European hedgehog) 2

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 2

Macropus_eugenii_69_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 2

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Meleagris_gallopavo_69_2 (Turkey) 2

Gallus_gallus_69_2 (Chicken) 2

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 2

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_69_2.0 (Green anole) 2

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 1

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 3

Takifugu_rubripes_69_4 (Torafugu) 3

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 3

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 4

Danio_rerio_69_9 (Zebrafish) 3

Ciona_intestinalis_69 (Vase tunicate) 1

Caenorhabditis_elegans_69_215 (Roundworm) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 14

Homo_sapiens__(NCBI_version) (Human) 3

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

STRING_v9.0.5_(STRING) 76

Uniprot_2018_03_genome 9621

NCBI_2017_08_genome 1410

TargetDB__(Targets) 5

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Domain combinations for _gap_,54236,50729,_gap_ superfamilies in groups of genomes