SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,54236,54001 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
54001 - Cysteine proteinases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Mus_musculus_76_38   (House mouse)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Canis_familiaris_76_3.1   (Dog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Poecilia_formosa_76   (Amazon molly)   0
Drosophila_willistoni_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Phanerochaete_chrysosporium_RP-78_2.1 0
Citrus_clementina_v165 0
Thellungiella_halophila_v173 1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   0
Fragaria_vesca_   (Wild strawberry)   1
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_v181   (Maize)   0
Musa_acuminata_22   (Wild Malaysian banana)   1
Trypanosoma_cruzi_strain_CL_Brener 1
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Hyaloperonospora_arabidopsidis_22 0

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Longest transcript per gene
Genome     Number
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
NCBI_2017_08_genome 6
Uniprot_2018_03_genome 102
Protozoadb_2010_08_(Protozoadb) 1

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