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  Home > SCOP hierarchy > Domain combination - _gap_,54236,_gap_

Domain combinations for _gap_,54236,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   42
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_76_3.1   (Western gorilla)   19
Pongo_abelii_76_2   (Sumatran orangutan)   10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   22
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   21
Otolemur_garnettii_76_3   (Small-eared galago)   10
Microcebus_murinus_76_1   (Gray mouse lemur)   9
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   28
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10
Cavia_porcellus_76_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_76_2   (Rabbit)   16
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   6
Sus_scrofa_76_10.2   (Pig)   9
Bos_taurus_76_3.1   (Cattle)   10
Ovis_aries_76_3.1   (Sheep)   13
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_76_1.0   (Domestic ferret)   12
Ailuropoda_melanoleuca_76_1   (Giant panda)   10
Canis_familiaris_76_3.1   (Dog)   12
Felis_catus_76_6.2   (Domestic cat)   8
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   12
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   8
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   12
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   10
Saccoglossus_kowalevskii_v3.0 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   7
Meleagris_gallopavo_76_2   (Turkey)   7
Gallus_gallus_76_4   (Chicken)   8
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   16
Lepisosteus_oculatus_76   (Spotted gar)   11
Gadus_morhua_76_1   (Atlantic cod)   10
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11
Takifugu_rubripes_76_4   (Torafugu)   30
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   16
Oryzias_latipes_76_1   (Japanese medaka)   12
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   12
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   15
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 28
Octopus_bimaculoides_280 6
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 8
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 3
Drosophila_suzukii 4
Drosophila_yakuba_1.3 3
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 7
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   5
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 3
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 5
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 3
Amphimedon_queenslandica 25
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 2
Phycomyces_blakesleeanus_ 3
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 3
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 6
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 4
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 5
Hebeloma_cylindrosporum_h7_v2.0 8
Laccaria_bicolor_S238N-H82_ 5
Agaricus_bisporus_var._bisporus_ 3
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 8
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 1
Trametes_versicolor_v1.0 4
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 3
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 5
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 3
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 3
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 5
Schizosaccharomyces_japonicus_yFS275_ 1
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 3
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 4
Entamoeba_invadens_1.2 5
Entamoeba_histolytica_1 2
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   13
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   7
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4
Gossypium_raimondii_v221 23
Citrus_clementina_v165 7
Citrus_sinensis_v154   (Sweet orange)   5
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   3
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   6
Cucumis_sativus_v122   (Cucumber)   9
Fragaria_vesca_   (Wild strawberry)   9
Malus_domestica_v196   (Apple)   29
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   6
Manihot_esculenta_v147   (Cassava)   7
Populus_trichocarpa_v156   (Black cottonwood)   7
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   2
Actinidia_chinensis_Hongyang_ 5
Aquilegia_coerulea_v195 7
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   5
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 10
Oryza_glumaepatula_22 8
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 6
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   9
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   9
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 4
Physcomitrella_patens 5
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 2
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 2
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 11
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 4
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 8
Aureococcus_anophagefferens_ 5
Albugo_laibachii_22 6
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_arrhenomanes_ATCC_12531_22 6
Pythium_ultimum_v1.7-2 5
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 4
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 4
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 5
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 6
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 2
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 3
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 67
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 13
Guillardia_theta_CCMP2712_v1.0_ 7
Emiliania_huxleyi_CCMP1516_ 8
Parachlamydia_acanthamoebae_UV-7 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Cryptococcus_neoformans_var._grubii_H99_ 4
Cryptococcus_neoformans_B-3501A_ 4
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 5
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_69_3.1   (Western gorilla)   15
Pongo_abelii_69_2   (Sumatran orangutan)   10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   10
Macaca_mulatta_69_1   (Rhesus monkey)   11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_69_3   (Small-eared galago)   10
Microcebus_murinus_69_1   (Gray mouse lemur)   9
Rattus_norvegicus_69_3.4   (Norway rat)   10
Mus_musculus_69_38   (House mouse)   9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11
Cavia_porcellus_69_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_69_2   (Rabbit)   12
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   6
Sus_scrofa_69_10.2   (Pig)   9
Bos_taurus_69_3.1   (Cattle)   9
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12
Ailuropoda_melanoleuca_69_1   (Giant panda)   10
Canis_familiaris_69_3.1   (Dog)   11
Felis_catus_69   (Domestic cat)   8
Equus_caballus_69_2   (Horse)   10
Myotis_lucifugus_69_2.0   (Little brown bat)   12
Pteropus_vampyrus_69_1   (Large flying fox)   7
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   8
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_69_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   9
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   9
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   12
Gadus_morhua_69_1   (Atlantic cod)   10
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12
Oryzias_latipes_69_1   (Japanese medaka)   9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   8
Danio_rerio_69_9   (Zebrafish)   10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   6
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   3

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   46
Homo_sapiens__(NCBI_version)   (Human)   19
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   29
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Uniprot_2018_03_genome 29895
NCBI_2017_08_genome 6694
NCBI_viral_sequences_(Viral) 0
TargetDB__(Targets) 26
UniProt__viral_sequences_(Viral) 8
Protein_Data_Bank_(all_PDB_sequenc) 7
Protozoadb_2010_08_(Protozoadb) 87
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 271
PDB_chains_(SCOP_1.75)_(PDB) 0
STRING_v9.0.5_(STRING) 485

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.