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  Home > SCOP hierarchy > Domain combination - _gap_,54236,_gap_,49562,48371,56112

Domain combinations for _gap_,54236,_gap_,49562,48371,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   4
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   5
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   4
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   6
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   5
Xenopus_laevis_   (African clawed frog)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   7
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   20
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   3
Adineta_vaga 1
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 2
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 5
Entamoeba_histolytica_1 5
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 2
Leishmania_infantum_JPCM5_2.4 1
Trypanosoma_cruzi_strain_CL_Brener 1
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 3
Ichthyophthirius_multifiliis_strain_G5_ 2
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 4

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   6
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   4
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   4
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7
Takifugu_rubripes_69_4   (Torafugu)   7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   2
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   7
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
PDB_chains_(SCOP_1.75)_(PDB) 4
Protozoadb_2010_08_(Protozoadb) 27
STRING_v9.0.5_(STRING) 140
TargetDB__(Targets) 6
Uniprot_2018_03_genome 21580
NCBI_2017_08_genome 2304
UniProt__viral_sequences_(Viral) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.