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Home > SCOP hierarchy > Domain combination - _gap_,54452,48726,_gap_

Domain combinations for _gap_,54452,48726,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54452 - MHC antigen-recognition domain
48726 - Immunoglobulin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Gorilla_gorilla_76_3.1 (Western gorilla) 3

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 1

Papio_anubis_76 (Olive baboon) 4

Rattus_norvegicus_76_5.0 (Norway rat) 2

Mus_musculus_76_38 (House mouse) 4

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Ochotona_princeps_76 (American pika) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 5

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Canis_familiaris_76_3.1 (Dog) 2

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Loxodonta_africana_76_3 (African savanna elephant) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 3

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Gallus_gallus_76_4 (Chicken) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Danio_rerio_76_9 (Zebrafish) 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 3

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 3

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_69_2 (Rabbit) 2

Ochotona_princeps_69 (American pika) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Canis_familiaris_69_3.1 (Dog) 2

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Loxodonta_africana_69_3 (African savanna elephant) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 2

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Others
Genome Number

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 3

STRING_v9.0.5_(STRING) 12

Uniprot_2018_03_genome 1737

NCBI_2017_08_genome 606

UniProt__viral_sequences_(Viral) 2

NCBI_viral_sequences_(Viral) 2

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