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Domain combinations for _gap_,54506,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54506 - Diaminopimelate epimerase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Saccoglossus_kowalevskii_v3.0 6
Gallus_gallus_76_4   (Chicken)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 1
Strigamia_maritima_22 1
Caenorhabditis_japonica_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_briggsae_2 1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 1
Amphimedon_queenslandica 1
Monosiga_brevicollis_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 2
Hydnomerulius_pinastri_v2.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 1
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 0
Neurospora_tetrasperma_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 9
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 2
Trichoderma_atroviride_ 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 2
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 3
Penicillium_marneffei_ATCC_18224_ 2
Hansenula_polymorpha_v2.0 0
Pichia_membranifaciensv1.0 1
Candida_dubliniensis_CD36_ 1
Candida_parapsilosis_ 1
Catenaria_anguillulae_PL171_v1.0 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Fragaria_vesca_   (Wild strawberry)   0
Linum_usitatissimum_v200   (Flax)   0
Oryza_barthii_22   (African wild rice)   1
Setaria_italica_v164   (Foxtail millet)   1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Bathycoccus_prasinos_ 1
Porphyridium_purpureum_02_2012 1
Bigelowiella_natans_CCMP2755_22 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Aureococcus_anophagefferens_ 1
Phytophthora_capsici_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 2
Rubrobacter_xylanophilus_DSM_9941 2
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Streptosporangium_roseum_DSM_43021 3
Kitasatospora_setae_KM-6054 3
Streptomyces_coelicolor_A3(2) 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Microlunatus_phosphovorus_NM-1 4
Micromonospora_sp._L5 1
Actinoplanes_missouriensis_431 1
Gordonia_polyisoprenivorans_VH2 1
Rhodococcus_jostii_RHA1 2
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Intrasporangium_calvum_DSM_43043 2
Brachybacterium_faecium_DSM_4810 2
Arthrobacter_sp._Rue61a 2
Renibacterium_salmoninarum_ATCC_33209 1
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_deserti_VCD115 1
Megasphaera_elsdenii_DSM_20460 1
Desulfosporosinus_acidiphilus_SJ4 1
Eubacterium_limosum_KIST612 1
Clostridium_difficile_630 1
Clostridium_sticklandii_DSM_519 1
Alkaliphilus_oremlandii_OhILAs 1
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_botulinum_A_str._ATCC_3502 1
Thermosediminibacter_oceani_DSM_16646 1
Melissococcus_plutonius_DAT561 1
Enterococcus_hirae_ATCC_9790 1
Brevibacillus_brevis_NBRC_100599 2
Paenibacillus_terrae_HPL-003 1
Lysinibacillus_sphaericus_C3-41 1
Bacillus_weihenstephanensis_KBAB4 2
Bacillus_thuringiensis_str._Al_Hakam 2
Bacillus_cereus_03BB102 2
Bacillus_anthracis_str._A0248 2
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Rhodothermus_marinus_DSM_4252 1
Belliella_baltica_DSM_15883 1
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 2
Sphingobacterium_sp._21 1
Zunongwangia_profunda_SM-A87 1
Krokinobacter_sp._4H-3-7-5 1
Maribacter_sp._HTCC2170 2
Robiginitalea_biformata_HTCC2501 1
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 1
Flavobacterium_columnare_ATCC_49512 1
Planctomyces_limnophilus_DSM_3776 1
Pirellula_staleyi_DSM_6068 1
Fretibacterium_fastidiosum 1
Thermovirga_lienii_DSM_17291 2
Thermanaerovibrio_acidaminovorans_DSM_6589 1
Anaerobaculum_mobile_DSM_13181 1
Deferribacter_desulfuricans_SSM1 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 2
Granulicella_mallensis_MP5ACTX8 1
Acidobacterium_capsulatum_ATCC_51196 1
Arcobacter_nitrofigilis_DSM_7299 1
Desulfobacterium_autotrophicum_HRM2 2
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Myxococcus_xanthus_DK_1622 1
Pseudogulbenkiania_sp._NH8B 2
Burkholderia_phytofirmans_PsJN 2
Burkholderia_phymatum_STM815 2
Burkholderia_xenovorans_LB400 3
Burkholderia_sp._RPE64 3
Burkholderia_sp._CCGE1002 2
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_ambifaria_AMMD 2
Burkholderia_cenocepacia_HI2424 2
Burkholderia_multivorans_ATCC_17616 4
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 3
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 1
Variovorax_paradoxus_S110 1
Acidovorax_sp._KKS102 1
Collimonas_fungivorans_Ter331 1
Herbaspirillum_seropedicae_SmR1 1
Bordetella_petrii_DSM_12804 1
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 1
Asticcacaulis_excentricus_CB_48 1
Sphingobium_sp._SYK-6 2
Maricaulis_maris_MCS10 1
Phaeobacter_gallaeciensis_2.10 1
Pseudovibrio_sp._FO-BEG1 3
Jannaschia_sp._CCS1 1
Ruegeria_sp._TM1040 1
Ruegeria_pomeroyi_DSS-3 1
Ketogulonicigenium_vulgare_Y25 1
Ketogulonigenium_vulgarum_WSH-001 1
Rhodobacter_sphaeroides_ATCC_17029 1
Paracoccus_denitrificans_PD1222 4
Tistrella_mobilis_KA081020-065 1
Rhodospirillum_rubrum_F11 1
Azospirillum_brasilense_Sp245 1
Candidatus_Puniceispirillum_marinum_IMCC1322 2
Starkeya_novella_DSM_506 3
Methylobacterium_sp._4-46 1
Methylobacterium_nodulans_ORS_2060 2
Ochrobactrum_anthropi_ATCC_49188 2
Brucella_microti_CCM_4915 2
Brucella_pinnipedialis_B2/94 2
Brucella_canis_ATCC_23365 2
Brucella_suis_ATCC_23445 2
Brucella_melitensis_ATCC_23457 2
Brucella_ovis_ATCC_25840 2
Brucella_abortus_S19 2
Sinorhizobium_fredii_NGR234 3
Sinorhizobium_medicae_WSM419 2
Sinorhizobium_meliloti_AK83 2
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 3
Rhizobium_etli_CIAT_652 5
Rhizobium_leguminosarum_bv._viciae_3841 2
Agrobacterium_tumefaciens_str._C58 3
Agrobacterium_radiobacter_K84 2
Agrobacterium_sp._H13-3 3
Agrobacterium_vitis_S4 3
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 3
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 3
Mesorhizobium_loti_MAFF303099 2
Pelagibacterium_halotolerans_B2 2
Oceanimonas_sp._GK1 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Psychromonas_ingrahamii_37 1
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 2
Shewanella_halifaxensis_HAW-EB4 2
Shewanella_sediminis_HAW-EB3 2
Shewanella_pealeana_ATCC_700345 2
Shewanella_woodyi_ATCC_51908 2
Shewanella_amazonensis_SB2B 2
Shewanella_violacea_DSS12 2
Colwellia_psychrerythraea_34H 1
Marinobacter_adhaerens_HP15 1
Marinobacter_sp._BSs20148 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Hahella_chejuensis_KCTC_2396 1
Marinomonas_posidonica_IVIA-Po-181 1
Chromohalobacter_salexigens_DSM_3043 2
Halomonas_elongata_DSM_2581 3
Frateuria_aurantia_DSM_6220 1
Xanthomonas_axonopodis_pv._citri_str._306 2
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Spiribacter_sp._UAH-SP71 3
Alkalilimnicola_ehrlichii_MLHE-1 1
Photorhabdus_asymbiotica 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Providencia_stuartii_MRSN_2154 1
Serratia_sp._AS12 1
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 1
Pantoea_sp._At-9b 1
Erwinia_amylovora_ATCC_49946 1
Klebsiella_variicola_At-22 1
Enterobacter_aerogenes_KCTC_2190 1
Enterobacter_asburiae_LF7a 1
Citrobacter_rodentium_ICC168 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2
Pseudomonas_fulva_12-X 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_aeruginosa_UCBPP-PA14 2
Psychrobacter_sp._G 1
Psychrobacter_cryohalolentis_K5 1
Acinetobacter_oleivorans_DR1 1
Acinetobacter_calcoaceticus_PHEA-2 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Thermococcus_sibiricus_MM_739 2
Haloferax_volcanii_DS2 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Spiroplasma_apis_B31 1
Gordonibacter_pamelaeae_7-10-1-b 1
Streptomyces_rapamycinicus_NRRL_5491 2
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Propionibacterium_acidipropionici_ATCC_4875 1
Nocardia_brasiliensis_ATCC_700358 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Bifidobacterium_thermophilum_RBL67 1
Clostridium_difficile_BI1 1
Clostridium_difficile_R20291 1
Clostridium_difficile_CD196 1
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Thermacetogenium_phaeum_DSM_12270 1
Melissococcus_plutonius_ATCC_35311 1
Paenibacillus_polymyxa_CR1 1
Bacillus_toyonensis_BCT-7112 2
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 2
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 2
Bacillus_cereus_biovar_anthracis_str._CI 2
Bacillus_cereus_AH820 2
Bacillus_cereus_AH187 2
Bacillus_cereus_B4264 2
Bacillus_cereus_G9842 2
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 2
Bacillus_cereus_E33L 2
Bacillus_cereus_ATCC_14579 2
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 2
Bacillus_anthracis_str._CDC_684 2
Bacillus_anthracis_str._'Ames_Ancestor' 2
Bacillus_anthracis_str._Sterne 2
Bacillus_anthracis_str._Ames 2
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 1
Psychroflexus_torquis_ATCC_700755 1
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 2
Burkholderia_sp._YI23 8
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 2
Burkholderia_ambifaria_MC40-6 5
Burkholderia_cenocepacia_MC0-3 2
Burkholderia_cenocepacia_AU_1054 2
Burkholderia_cenocepacia_J2315 2
Burkholderia_multivorans_ATCC_17616 4
Burkholderia_cepacia_GG4 4
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Phaeobacter_gallaeciensis_DSM_17395 1
Phaeobacter_gallaeciensis_DSM_26640 1
Leisingera_methylohalidivorans_DSM_14336 1
Octadecabacter_antarcticus_307 1
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_KD131 1
Rhodobacter_sphaeroides_2.4.1 1
Paracoccus_aminophilus_JCM_7686 2
Rhodospirillum_rubrum_ATCC_11170 1
Brucella_ceti_TE10759-12 2
Brucella_ceti_TE28753-12 2
Brucella_canis_HSK_A52141 2
Brucella_suis_VBI22 2
Brucella_suis_1330 2
Brucella_suis_1330 2
Brucella_melitensis_NI 2
Brucella_melitensis_M5-90 2
Brucella_melitensis_M28 2
Brucella_melitensis_bv._1_str._16M 2
Brucella_abortus_A13334 2
Brucella_melitensis_biovar_Abortus_2308 2
Brucella_abortus_bv._1_str._9-941 2
Sinorhizobium_fredii_USDA_257 3
Sinorhizobium_fredii_HH103 4
Sinorhizobium_meliloti_2011 2
Sinorhizobium_meliloti_GR4 2
Sinorhizobium_meliloti_Rm41 3
Sinorhizobium_meliloti_SM11 3
Sinorhizobium_meliloti_BL225C 2
Sinorhizobium_meliloti_1021 2
Rhizobium_etli_CFN_42 2
Rhizobium_etli_bv._mimosae_str._Mim1 4
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 4
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2
Mesorhizobium_australicum_WSM2073 2
Hyphomicrobium_denitrificans_1NES1 1
Simiduia_agarivorans_SA1_=_DSM_21679 2
Vibrio_parahaemolyticus_BB22OP 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 2
Xanthomonas_axonopodis_Xac29-1 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Spiribacter_salinus_M19-40 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Erwinia_pyrifoliae_DSM_12163 1
Erwinia_amylovora_CFBP1430 1
Raoultella_ornithinolytica_B6 1
Klebsiella_pneumoniae_CG43 1
Klebsiella_pneumoniae_342 1
Enterobacter_aerogenes_EA1509E 1
Enterobacter_cloacae_SCF1 1
Pseudomonas_denitrificans_ATCC_13867 2
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_W619 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 2
Pseudomonas_aeruginosa_SCV20265 2
Pseudomonas_aeruginosa_MTB-1 2
Pseudomonas_aeruginosa_LES431 2
Pseudomonas_aeruginosa_RP73 2
Pseudomonas_aeruginosa_B136-33 2
Pseudomonas_aeruginosa_PA1R 2
Pseudomonas_aeruginosa_PA1 2
Pseudomonas_aeruginosa_DK2 2
Pseudomonas_aeruginosa_NCGM2.S1 4
Pseudomonas_aeruginosa_M18 2
Pseudomonas_aeruginosa_LESB58 2
Pseudomonas_aeruginosa_PA7 2
Pseudomonas_aeruginosa_PAO1 2
Acinetobacter_baumannii_ZW85-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB0715 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_TCDC-AB0715 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii__ATCC_19606 1
Acinetobacter_baumannii_AB307-0294 1
Acinetobacter_baumannii_AYE 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_baumannii_AB0057 1
Acinetobacter_baumannii_ACICU 1
Thermococcus_litoralis_DSM_5473 2
Ferroplasma_acidarmanus_fer1 1
Haloarcula_hispanica_N601 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
NCBI_plasmid_sequences_(Plasmids) 56
PDB_chains_(SCOP_1.75)_(PDB) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 24
STRING_v9.0.5_(STRING) 313
Uniprot_2018_03_genome 40280
NCBI_2017_08_genome 25418
Protein_Data_Bank_(all_PDB_sequenc) 4
Protozoadb_2010_08_(Protozoadb) 4
TargetDB__(Targets) 19

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