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  Home > SCOP hierarchy > Domain combination - _gap_,54695,_gap_,117281

Domain combinations for _gap_,54695,_gap_,117281 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54695 - POZ domain
117281 - Kelch motif

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   28
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11
Gorilla_gorilla_76_3.1   (Western gorilla)   15
Pongo_abelii_76_2   (Sumatran orangutan)   15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14
Papio_anubis_76   (Olive baboon)   16
Macaca_mulatta_76_1   (Rhesus monkey)   17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   23
Otolemur_garnettii_76_3   (Small-eared galago)   13
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   18
Mus_musculus_76_38   (House mouse)   24
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_76_2   (Rabbit)   17
Ochotona_princeps_76   (American pika)   7
Tupaia_belangeri_76   (Northern tree shrew)   11
Sus_scrofa_76_10.2   (Pig)   15
Bos_taurus_76_3.1   (Cattle)   16
Ovis_aries_76_3.1   (Sheep)   16
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_76_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_76_1   (Giant panda)   12
Canis_familiaris_76_3.1   (Dog)   16
Felis_catus_76_6.2   (Domestic cat)   12
Equus_caballus_76_2   (Horse)   10
Myotis_lucifugus_76_2.0   (Little brown bat)   15
Pteropus_vampyrus_76_1   (Large flying fox)   11
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   13
Echinops_telfairi_76   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14
Ornithorhynchus_anatinus_76_5   (Platypus)   11
Saccoglossus_kowalevskii_v3.0 15
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   11
Gallus_gallus_76_4   (Chicken)   12
Anas_platyrhynchos_76_1.0   (Mallard)   7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13
Anolis_carolinensis_76_2.0   (Green anole)   9
Xenopus_laevis_   (African clawed frog)   5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   8
Latimeria_chalumnae_76_1   (Coelacanth)   17
Lepisosteus_oculatus_76   (Spotted gar)   26
Gadus_morhua_76_1   (Atlantic cod)   10
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   20
Oryzias_latipes_76_1   (Japanese medaka)   14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16
Poecilia_formosa_76   (Amazon molly)   20
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15
Astyanax_mexicanus_76   (Mexican tetra)   16
Danio_rerio_76_9   (Zebrafish)   22
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 5
Octopus_bimaculoides_280 5
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 1
Capitella_sp._I_ 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   4
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   17
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 8
Sarcoptes_scabiei 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 0
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 1
Amphimedon_queenslandica 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Dictyostelium_discoideum 1
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_infestans_T30-4_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Trypanosoma_brucei_Lister_427_v4.1 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   16
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11
Gorilla_gorilla_69_3.1   (Western gorilla)   12
Pongo_abelii_69_2   (Sumatran orangutan)   14
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14
Macaca_mulatta_69_1   (Rhesus monkey)   14
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   13
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   12
Mus_musculus_69_38   (House mouse)   15
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_69_2   (Rabbit)   15
Ochotona_princeps_69   (American pika)   7
Tupaia_belangeri_69   (Northern tree shrew)   11
Sus_scrofa_69_10.2   (Pig)   14
Bos_taurus_69_3.1   (Cattle)   15
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_69_1.0   (Domestic ferret)   13
Ailuropoda_melanoleuca_69_1   (Giant panda)   11
Canis_familiaris_69_3.1   (Dog)   13
Felis_catus_69   (Domestic cat)   7
Equus_caballus_69_2   (Horse)   10
Myotis_lucifugus_69_2.0   (Little brown bat)   15
Pteropus_vampyrus_69_1   (Large flying fox)   11
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   13
Echinops_telfairi_69   (Small Madagascar hedgehog)   8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_69_5   (Platypus)   11
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   9
Gallus_gallus_69_2   (Chicken)   5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11
Anolis_carolinensis_69_2.0   (Green anole)   12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_69_1   (Coelacanth)   15
Gadus_morhua_69_1   (Atlantic cod)   10
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7
Takifugu_rubripes_69_4   (Torafugu)   15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14
Oryzias_latipes_69_1   (Japanese medaka)   12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   13
Danio_rerio_69_9   (Zebrafish)   13
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   28
Homo_sapiens__(NCBI_version)   (Human)   21
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
STRING_v9.0.5_(STRING) 351
Uniprot_2018_03_genome 24642
NCBI_2017_08_genome 6531
TargetDB__(Targets) 2
Protozoadb_2010_08_(Protozoadb) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.