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Home > SCOP hierarchy > Domain combination - _gap_,54736,_gap_,46785,_gap_

Domain combinations for _gap_,54736,_gap_,46785,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54736 - ClpS-like
46785 - "Winged helix" DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 4

Pan_troglodytes_76_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 4

Pongo_abelii_76_2 (Sumatran orangutan) 2

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 3

Papio_anubis_76 (Olive baboon) 2

Macaca_mulatta_76_1 (Rhesus monkey) 3

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_76_3 (Small-eared galago) 1

Microcebus_murinus_76_1 (Gray mouse lemur) 2

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 3

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 1

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_76_2 (Rabbit) 4

Ochotona_princeps_76 (American pika) 1

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 3

Bos_taurus_76_3.1 (Cattle) 2

Ovis_aries_76_3.1 (Sheep) 3

Vicugna_pacos_76_1 (Alpaca) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_76_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_76_1 (Giant panda) 2

Canis_familiaris_76_3.1 (Dog) 4

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 5

Myotis_lucifugus_76_2.0 (Little brown bat) 3

Pteropus_vampyrus_76_1 (Large flying fox) 2

Sorex_araneus_76_1 (European shrew) 2

Erinaceus_europaeus_76 (Western European hedgehog) 1

Loxodonta_africana_76_3 (African savanna elephant) 4

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 4

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Meleagris_gallopavo_76_2 (Turkey) 2

Gallus_gallus_76_4 (Chicken) 2

Anas_platyrhynchos_76_1.0 (Mallard) 2

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 2

Ficedula_albicollis_76_1.0 (Collared flycatcher) 2

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 4

Anolis_carolinensis_76_2.0 (Green anole) 2

Xenopus_laevis_ (African clawed frog) 2

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 3

Latimeria_chalumnae_76_1 (Coelacanth) 1

Lepisosteus_oculatus_76 (Spotted gar) 4

Gadus_morhua_76_1 (Atlantic cod) 2

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 4

Takifugu_rubripes_76_4 (Torafugu) 7

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 3

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 1

Adineta_vaga 1

Octopus_bimaculoides_280 1

Crassostrea_gigas_22 (Pacific oyster) 1

Lottia_gigantea_ (Owl limpet) 1

Capitella_sp._I_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 4

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 1

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 1

Drosophila_persimilis_1.3 1

Drosophila_suzukii 1

Drosophila_yakuba_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 2

Drosophila_erecta_1.3 1

Drosophila_ananassae_1.3 1

Drosophila_virilis_1.2 1

Drosophila_mojavensis_1.3 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Rhodnius_prolixus_22 1

Daphnia_pulex_ (Common water flea) 1

Strigamia_maritima_22 1

Sarcoptes_scabiei 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1

Pristionchus_pacificus_ 1

Caenorhabditis_briggsae_2 1

Mnemiopsis_leidyi (Sea walnut) 1

Trichoplax_adhaerens_ 1

Mortierella_verticillata_NRRL_6337_ 1

Phycomyces_blakesleeanus_ 2

Rhizopus_oryzae_RA_99-880_ 2

Mucor_circinelloides_ 2

Rhizomucor_miehei_CAU432_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 1

Ustilago_maydis_ 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1

Melampsora_laricis-populina_ 1

Rhodotorula_graminis_WP1_v1.0 1

Microbotryum_violaceum_22 1

Wallemia_sebi_v1.0 1

Sphaerobolus_stellatus_v1.0 1

Piloderma_croceum_F_1598_v1.0 1

Serpula_lacrymans_var._lacrymans_S7.9_ 1

Coniophora_puteana 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Pisolithus_tinctorius_Marx_270_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Laccaria_bicolor_S238N-H82_ 1

Agaricus_bisporus_var._bisporus_ 1

Schizophyllum_commune_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Heterobasidion_annosum_ 1

Gloeophyllum_trabeumv1.0 1

Punctularia_strigosozonata_v1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Fomitiporia_mediterranea_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Postia_placenta_ 1

Wolfiporia_cocos_MD-104_SS10__v1.0 1

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 1

Trametes_versicolor_v1.0 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Glomerella_graminicola_22 1

Trichoderma_asperellum_CBS_433.97_v1.0 1

Trichoderma_atroviride_ 1

Trichoderma_virens_Gv29-8_ 1

Dothistroma_septosporum 1

Pichia_pastoris_GS115_ 1

Allomyces_macrogynus_ATCC_38327_ 1

Spizellomyces_punctatus_DAOM_BR117_ 1

Guillardia_theta_CCMP2712_v1.0_ 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 3

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 1

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 1

Batrachochytrium_dendrobatidis_JAM81_ 1

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 3

Pan_troglodytes_69_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 2

Macaca_mulatta_69_1 (Rhesus monkey) 3

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 1

Otolemur_garnettii_69_3 (Small-eared galago) 1

Microcebus_murinus_69_1 (Gray mouse lemur) 2

Rattus_norvegicus_69_3.4 (Norway rat) 3

Mus_musculus_69_38 (House mouse) 3

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 1

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_69_2 (Rabbit) 2

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 2

Vicugna_pacos_69_1 (Alpaca) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_69_1 (Giant panda) 2

Canis_familiaris_69_3.1 (Dog) 4

Equus_caballus_69_2 (Horse) 3

Myotis_lucifugus_69_2.0 (Little brown bat) 3

Pteropus_vampyrus_69_1 (Large flying fox) 2

Sorex_araneus_69_1 (European shrew) 2

Erinaceus_europaeus_69 (Western European hedgehog) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 2

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Meleagris_gallopavo_69_2 (Turkey) 2

Gallus_gallus_69_2 (Chicken) 2

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 2

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 2

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 1

Drosophila_melanogaster_69_5 (Fruit fly) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 3

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

TargetDB__(Targets) 2

STRING_v9.0.5_(STRING) 63

Uniprot_2018_03_genome 10075

NCBI_2017_08_genome 1219

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Domain combinations for _gap_,54736,_gap_,46785,_gap_ superfamilies in groups of genomes