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  Home > SCOP hierarchy > Domain combination - _gap_,54791

Domain combinations for _gap_,54791 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54791 - Eukaryotic type KH-domain (KH-domain type I)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   22
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   7
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   3
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   5
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 11
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 5
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   2
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 3
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   5
Strigamia_maritima_22 2
Sarcoptes_scabiei 3
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 8
Meloidogyne_incognita_   (Southern root-knot nematode)   6
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 7
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 11
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 1
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 1
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 2
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 2
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 2
Selaginella_moellendorffii_ 6
Pinus_taeda   (Loblolly pine)   8
Picea_abies   (Norway spruce)   5
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 11
Citrus_clementina_v165 7
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   4
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   7
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   7
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 12
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 5
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8
Oryza_sativa_v193   (Rice)   8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   14
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   13
Zea_mays_v181   (Maize)   17
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 3
Physcomitrella_patens 2
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 3
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 4
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 1
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 3
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 1
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 11
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 4
Emiliania_huxleyi_CCMP1516_ 1
Thermobaculum_terrenum_ATCC_BAA-798 0
Candidatus_Phytoplasma_mali 0
Aster_yellows_witches'-broom_phytoplasma_AYWB 0
Onion_yellows_phytoplasma_OY-M 0
Mesoplasma_florum_L1 0
Ureaplasma_parvum_serovar_3_str._ATCC_27815 0
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 0
Mycoplasma_leachii_99/014/6 0
Mycoplasma_mycoides_subsp._capri_LC_str._95010 0
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 0
Mycoplasma_haemocanis_str._Illinois 0
Mycoplasma_haemofelis_Ohio2 0
Mycoplasma_penetrans_HF-2 0
Mycoplasma_putrefaciens_KS1 0
Mycoplasma_gallisepticum_str._F 0
Conexibacter_woesei_DSM_14684 0
Cryptobacterium_curtum_DSM_15641 0
Eggerthella_sp._YY7918 0
Eggerthella_lenta_DSM_2243 0
Slackia_heliotrinireducens_DSM_20476 0
Olsenella_uli_DSM_7084 0
Atopobium_parvulum_DSM_20469 0
Coriobacterium_glomerans_PW2 0
Rubrobacter_xylanophilus_DSM_9941 0
Thermobispora_bispora_DSM_43833 0
Nakamurella_multipartita_DSM_44233 0
Acidothermus_cellulolyticus_11B 0
Catenulispora_acidiphila_DSM_44928 0
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Thermobifida_fusca_YX 0
Thermomonospora_curvata_DSM_43183 0
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Kribbella_flavida_DSM_17836 0
Propionibacterium_propionicum_F0230a 0
Propionibacterium_acnes_SK137 0
Microlunatus_phosphovorus_NM-1 0
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 0
Salinispora_arenicola_CNS-205 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Sanguibacter_keddieii_DSM_10542 0
Jonesia_denitrificans_DSM_20603 0
Cellulomonas_flavigena_DSM_20109 0
Cellulomonas_fimi_ATCC_484 0
[Cellvibrio]_gilvus_ATCC_13127 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Dehalococcoides_ethenogenes_195 0
Dehalococcoides_sp._BAV1 0
Dehalogenimonas_lykanthroporepellens_BL-DC-9 0
Anaerolinea_thermophila_UNI-1 0
Thermomicrobium_roseum_DSM_5159 0
Sphaerobacter_thermophilus_DSM_20745 0
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Deinococcus_gobiensis_I-0 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_geothermalis_DSM_11300 0
Deinococcus_proteolyticus_MRP 0
Deinococcus_radiodurans_R1 0
Oceanithermus_profundus_DSM_14977 0
Marinithermus_hydrothermalis_DSM_14884 0
Meiothermus_silvanus_DSM_9946 0
Meiothermus_ruber_DSM_1279 0
Thermus_sp._CCB_US3_UF1 0
Thermus_scotoductus_SA-01 0
Thermus_thermophilus_HB27 0
Anaerococcus_prevotii_DSM_20548 0
Finegoldia_magna_ATCC_29328 0
Veillonella_parvula_DSM_2008 0
Megasphaera_elsdenii_DSM_20460 0
Acidaminococcus_intestini_RyC-MR95 0
Acidaminococcus_fermentans_DSM_20731 0
Megamonas_hypermegale 0
Selenomonas_sputigena_ATCC_35185 0
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 0
Erysipelothrix_rhusiopathiae_str._Fujisawa 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Symbiobacterium_thermophilum_IAM_14863 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 0
Clostridium_clariflavum_DSM_19732 0
Eubacterium_siraeum 0
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Ethanoligenens_harbinense_YUAN-3 0
Faecalibacterium_prausnitzii 0
Ruminococcus_sp. 0
Ruminococcus_albus_7 0
Thermaerobacter_marianensis_DSM_12885 0
Sulfobacillus_acidophilus_DSM_10332 0
Oscillibacter_valericigenes_Sjm18-20 0
Candidatus_Desulforudis_audaxviator_MP104C 0
Thermincola_potens_JR 0
Pelotomaculum_thermopropionicum_SI 0
Desulfosporosinus_acidiphilus_SJ4 0
Desulfosporosinus_orientis_DSM_765 0
Dehalobacter_sp._DCA 0
Dehalobacter_sp._CF 0
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfitobacterium_hafniense_Y51 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_reducens_MI-1 0
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_kuznetsovii_DSM_6115 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Desulfotomaculum_ruminis_DSM_2154 0
Acetobacterium_woodii_DSM_1030 0
Eubacterium_eligens_ATCC_27750 0
Eubacterium_limosum_KIST612 0
Clostridium_difficile_630 0
Clostridium_sticklandii_DSM_519 0
Filifactor_alocis_ATCC_35896 0
Clostridium_saccharolyticum_WM1 0
Clostridium_phytofermentans_ISDg 0
Clostridium_lentocellum_DSM_5427 0
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Roseburia_hominis_A2-183 0
Butyrivibrio_proteoclasticus_B316 0
Syntrophothermus_lipocalidus_DSM_12680 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Heliobacterium_modesticaldum_Ice1 0
Alkaliphilus_oremlandii_OhILAs 0
Alkaliphilus_metalliredigens_QYMF 0
Candidatus_Arthromitus_sp._SFB-mouse-Japan 0
Clostridium_sp._BNL1100 0
Clostridium_novyi_NT 0
Clostridium_ljungdahlii_DSM_13528 0
Clostridium_kluyveri_DSM_555 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 0
Mahella_australiensis_50-1_BON 0
Thermosediminibacter_oceani_DSM_16646 0
Caldicellulosiruptor_obsidiansis_OB47 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Thermoanaerobacterium_xylanolyticum_LX-11 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Thermodesulfobium_narugense_DSM_14796 0
Coprothermobacter_proteolyticus_DSM_5265 0
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_tengcongensis_MB4 0
Carboxydothermus_hydrogenoformans_Z-2901 0
Moorella_thermoacetica_ATCC_39073 0
Ammonifex_degensii_KC4 0
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 0
Thermoanaerobacter_pseudethanolicus_ATCC_33223 0
Thermoanaerobacter_sp._X514 0
Thermoanaerobacter_italicus_Ab9 0
Thermoanaerobacter_wiegelii_Rt8.B1 0
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 0
Acetohalobium_arabaticum_DSM_5501 0
Halothermothrix_orenii_H_168 0
Halanaerobium_hydrogeniformans 0
Halanaerobium_praevalens_DSM_2228 0
Carnobacterium_sp._17-4 0
Carnobacterium_sp._WN1359 0
Aerococcus_urinae_ACS-120-V-Col10a 0
Tetragenococcus_halophilus_NBRC_12172 0
Melissococcus_plutonius_DAT561 0
Enterococcus_sp._7L76 0
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecium_Aus0004 0
Enterococcus_faecalis_62 0
Weissella_koreensis_KACC_15510 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_citreum_KM20 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_kefiranofaciens_ZW3 0
Lactobacillus_crispatus_ST1 0
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_johnsonii_FI9785 0
Lactobacillus_sanfranciscensis_TMW_1.1304 0
Lactobacillus_salivarius_CECT_5713 0
Lactobacillus_ruminis_ATCC_27782 0
Lactobacillus_fermentum_IFO_3956 0
Lactobacillus_amylovorus_GRL1118 0
Lactobacillus_sakei_subsp._sakei_23K 0
Lactobacillus_reuteri_DSM_20016 0
Lactobacillus_gasseri_ATCC_33323 0
Lactobacillus_plantarum_JDM1 0
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 0
Lactobacillus_buchneri_NRRL_B-30929 0
Lactobacillus_buchneri 0
Lactobacillus_brevis_ATCC_367 0
Lactobacillus_acidophilus_30SC 0
Pediococcus_claussenii_ATCC_BAA-344 0
Pediococcus_pentosaceus_ATCC_25745 0
Lactococcus_garvieae_ATCC_49156 0
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_sp._I-P16 0
Streptococcus_sp._I-G2 0
Streptococcus_intermedius_JTH08 0
Streptococcus_gallolyticus_UCN34 0
Streptococcus_pseudopneumoniae_IS7493 0
Streptococcus_pasteurianus_ATCC_43144 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_infantarius_subsp._infantarius_CJ18 0
Streptococcus_macedonicus_ACA-DC_198 0
Streptococcus_mitis_B6 0
Streptococcus_uberis_0140J 0
Streptococcus_parauberis_KCTC_11537 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_agalactiae_A909 0
Streptococcus_mutans_NN2025 0
Streptococcus_thermophilus_LMD-9 0
Streptococcus_suis_P1/7 0
Streptococcus_sanguinis_SK36 0
Streptococcus_salivarius_57.I 0
Streptococcus_oralis_Uo5 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sp._AT1b 0
Exiguobacterium_sibiricum_255-15 0
Kyrpidia_tusciae_DSM_2912 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_sp._JDR-2 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Bacillus_selenitireducens_MLS10 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Solibacillus_silvestris_StLB046 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 0
Oceanobacillus_iheyensis_HTE831 0
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 0
Geobacillus_sp._GHH01 0
Geobacillus_sp._WCH70 0
Geobacillus_thermodenitrificans_NG80-2 0
Halobacillus_halophilus_DSM_2266 0
Bacillus_sp._JS 0
Bacillus_sp._1NLA3E 0
Bacillus_amyloliquefaciens_FZB42 0
Bacillus_atrophaeus_1942 0
Bacillus_subtilis_subsp._subtilis_str._168 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_halodurans_C-125 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Bacillus_pseudofirmus_OF4 0
Bacillus_clausii_KSM-K16 0
Bacillus_cellulosilyticus_DSM_2522 0
Bacillus_pumilus_SAFR-032 0
Bacillus_megaterium_DSM_319 0
Bacillus_coagulans_2-6 0
Macrococcus_caseolyticus_JCSC5402 0
Staphylococcus_pseudintermedius_HKU10-03 0
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 0
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_haemolyticus_JCSC1435 0
Staphylococcus_epidermidis_RP62A 0
Staphylococcus_carnosus_subsp._carnosus_TM300 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 0
Candidatus_Cloacamonas_acidaminovorans 0
Gemmatimonas_aurantiaca_T-27 0
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 0
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobium_luteolum_DSM_273 0
Chlorobium_chlorochromatii_CaD3 0
Chlorobium_phaeobacteroides_DSM_266 0
Chlorobium_phaeovibrioides_DSM_265 0
Chlorobium_limicola_DSM_245 0
Chlorobaculum_parvum_NCIB_8327 0
Chlorobium_tepidum_TLS 0
Chloroherpeton_thalassium_ATCC_35110 0
Prosthecochloris_aestuarii_DSM_271 0
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Rhodothermus_marinus_DSM_4252 0
Flexibacter_litoralis_DSM_6794 0
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 0
Leadbetterella_byssophila_DSM_17132 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 0
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 0
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 0
Bacteroides_sp._CF50 0
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_intermedia_17 0
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 0
Porphyromonas_gingivalis_ATCC_33277 0
Alistipes_finegoldii_DSM_17242 0
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 0
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 0
Fluviicola_taffensis_DSM_16823 0
Candidatus_Sulcia_muelleri_SMDSEM 0
Owenweeksia_hongkongensis_DSM_17368 0
Zunongwangia_profunda_SM-A87 0
Krokinobacter_sp._4H-3-7-5 0
Gramella_forsetii_KT0803 0
Lacinutrix_sp._5H-3-7-4 0
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 0
Croceibacter_atlanticus_HTCC2559 0
Aequorivita_sublithincola_DSM_14238 0
Zobellia_galactanivorans 0
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Flavobacteriaceae_bacterium_3519-10 0
Polaribacter_sp._MED152 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_canimorsus_Cc5 0
Capnocytophaga_ochracea_DSM_7271 0
Weeksella_virosa_DSM_16922 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_psychrophilum_JIP02/86 0
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 0
Blattabacterium_sp._(Nauphoeta_cinerea) 0
Blattabacterium_sp._(Blattella_germanica)_str._Bge 0
Waddlia_chondrophila_WSU_86-1044 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 0
Phycisphaera_mikurensis_NBRC_102666 0
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 0
Coraliomargarita_akajimensis_DSM_45221 0
Opitutus_terrae_PB90-1 0
Fretibacterium_fastidiosum 0
Thermovirga_lienii_DSM_17291 0
Aminobacterium_colombiense_DSM_12261 0
Thermanaerovibrio_acidaminovorans_DSM_6589 0
Anaerobaculum_mobile_DSM_13181 0
Brachyspira_murdochii_DSM_12563 0
Brachyspira_intermedia_PWS/A 0
Brachyspira_pilosicoli_95/1000 0
Brachyspira_hyodysenteriae_WA1 0
Borrelia_garinii_PBi 0
Borrelia_bissettii_DN127 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_B31 0
Borrelia_recurrentis_A1 0
Borrelia_duttonii_Ly 0
Borrelia_crocidurae_str._Achema 0
Borrelia_turicatae_91E135 0
Borrelia_hermsii_DAH 0
Spirochaeta_smaragdinae_DSM_11293 0
Sphaerochaeta_pleomorpha_str._Grapes 0
Sphaerochaeta_globus_str._Buddy 0
Sphaerochaeta_coccoides_DSM_17374 0
Spirochaeta_caldaria_DSM_7334 0
Treponema_azotonutricium_ZAS-9 0
Treponema_primitia_ZAS-2 0
Treponema_brennaborense_DSM_12168 0
Treponema_paraluiscuniculi_Cuniculi_A 0
Treponema_succinifaciens_DSM_2489 0
Treponema_pallidum_subsp._pallidum_SS14 0
Treponema_denticola_ATCC_35405 0
Spirochaeta_africana_DSM_8902 0
Spirochaeta_thermophila_DSM_6192 0
Thermodesulfatator_indicus_DSM_15286 0
Thermodesulfobacterium_sp._OPB45 0
Desulfurispirillum_indicum_S5 0
Calditerrivibrio_nitroreducens_DSM_19672 0
Denitrovibrio_acetiphilus_DSM_12809 0
Deferribacter_desulfuricans_SSM1 0
Flexistipes_sinusarabici_DSM_4947 0
Marinitoga_piezophila_KA3 0
Petrotoga_mobilis_SJ95 0
Mesotoga_prima_MesG1.Ag.4.2 0
Kosmotoga_olearia_TBF_19.5.1 0
Fervidobacterium_pennivorans_DSM_9078 0
Fervidobacterium_nodosum_Rt17-B1 0
Thermosipho_melanesiensis_BI429 0
Thermosipho_africanus_TCF52B 0
Thermotoga_lettingae_TMO 0
Thermotoga_thermarum_DSM_5069 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 0
Thermotoga_neapolitana_DSM_4359 0
Thermotoga_maritima_MSB8 0
Thermovibrio_ammonificans_HB-1 0
Desulfurobacterium_thermolithotrophum_DSM_11699 0
Sulfurihydrogenibium_sp._YO3AOP1 0
Sulfurihydrogenibium_azorense_Az-Fu1 0
Persephonella_marina_EX-H1 0
Hydrogenobaculum_sp._SN 0
Hydrogenobaculum_sp._HO 0
Hydrogenobaculum_sp._Y04AAS1 0
Thermocrinis_albus_DSM_14484 0
Aquifex_aeolicus_VF5 0
Hydrogenobacter_thermophilus_TK-6 0
uncultured_Termite_group_1_bacterium_phylotype_Rs-D17 0
Dictyoglomus_turgidum_DSM_6724 0
Dictyoglomus_thermophilum_H-6-12 0
Caldisericum_exile_AZM16c01 0
Thermodesulfovibrio_yellowstonii_DSM_11347 0
Candidatus_Nitrospira_defluvii 0
Leptospirillum_ferrooxidans_C2-3 0
Streptobacillus_moniliformis_DSM_12112 0
Sebaldella_termitidis_ATCC_33386 0
Leptotrichia_buccalis_C-1013-b 0
Ilyobacter_polytropus_DSM_2926 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Candidatus_Methylomirabilis_oxyfera 0
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 0
Candidatus_Saccharimonas_aalborgensis 1
Bacteriovorax_marinus_SJ 0
Bdellovibrio_bacteriovorus_HD100 0
Nitratifractor_salsuginis_DSM_16511 0
Sulfurospirillum_deleyianum_DSM_6946 0
Sulfurospirillum_barnesii_SES-3 0
Arcobacter_sp._L 0
Arcobacter_nitrofigilis_DSM_7299 0
Arcobacter_butzleri_RM4018 0
Campylobacter_hominis_ATCC_BAA-381 0
Campylobacter_lari_RM2100 0
Campylobacter_curvus_525.92 0
Campylobacter_concisus_13826 0
Campylobacter_jejuni_subsp._doylei_269.97 0
Campylobacter_sp._03-427 0
Campylobacter_fetus_subsp._fetus_82-40 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Sulfuricurvum_kujiense_DSM_16994 0
Sulfurimonas_autotrophica_DSM_16294 0
Sulfurimonas_denitrificans_DSM_1251 0
Wolinella_succinogenes_DSM_1740 0
Helicobacter_cetorum_MIT_00-7128 0
Helicobacter_bizzozeronii_CIII-1 0
Helicobacter_hepaticus_ATCC_51449 0
Helicobacter_mustelae_12198 0
Helicobacter_felis_ATCC_49179 0
Helicobacter_cinaedi_PAGU611 0
Helicobacter_acinonychis_str._Sheeba 0
Helicobacter_pylori_B38 0
Nitratiruptor_sp._SB155-2 0
Sulfurovum_sp._NBC37-1 0
Desulfarculus_baarsii_DSM_2075 0
Desulfobacca_acetoxidans_DSM_11109 0
Syntrophus_aciditrophicus_SB 0
Desulfomonile_tiedjei_DSM_6799 0
Syntrophobacter_fumaroxidans_MPOB 0
Desulfurivibrio_alkaliphilus_AHT2 0
Desulfotalea_psychrophila_LSv54 0
Desulfobulbus_propionicus_DSM_2032 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfococcus_oleovorans_Hxd3 0
Desulfohalobium_retbaense_DSM_5692 0
Desulfomicrobium_baculatum_DSM_4028 0
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Lawsonia_intracellularis_PHE/MN1-00 0
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_alaskensis_G20 0
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Desulfovibrio_africanus_str._Walvis_Bay 0
Hippea_maritima_DSM_10411 0
Geobacter_daltonii_FRC-32 0
Geobacter_sp._M21 0
Geobacter_uraniireducens_Rf4 0
Geobacter_lovleyi_SZ 0
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 0
Pelobacter_carbinolicus_DSM_2380 0
Babela_massiliensis 0
Haliangium_ochraceum_DSM_14365 0
Magnetococcus_marinus_MC-1 0
Nanoarchaeum_equitans_Kin4-M 1
Acidilobus_saccharovorans_345-15 1
Ignicoccus_hospitalis_KIN4/I 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_uzoniensis_768-20 1
Thermoproteus_tenax_Kra_1 1
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 1
Chamaesiphon_minutus_PCC_6605 0
Candidatus_Phytoplasma_solani_tobfin_28409 0
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 0
Candidatus_Phytoplasma_australiense 0
Mesoplasma_florum_W37 0
Spiroplasma_syrphidicola_EA-1 0
Spiroplasma_diminutum_CUAS-1 0
Spiroplasma_chrysopicola_DF-1 0
Spiroplasma_taiwanense_CT-1 0
Spiroplasma_apis_B31 0
Ureaplasma_parvum_serovar_3_str._ATCC_700970 0
Mycoplasma_leachii_PG50 0
Mycoplasma_mycoides_subsp._mycoides_SC_str._Gladysdale 0
Mycoplasma_mycoides_subsp._mycoides_SC_str._PG1 0
Mycoplasma_haemofelis_str._Langford_1 0
Mycoplasma_putrefaciens_Mput9231 0
Mycoplasma_gallisepticum_NC08_2008.031-4-3P 0
Mycoplasma_gallisepticum_CA06_2006.052-5-2P 0
Mycoplasma_gallisepticum_NC06_2006.080-5-2P 0
Mycoplasma_gallisepticum_WI01_2001.043-13-2P 0
Mycoplasma_gallisepticum_NY01_2001.047-5-1P 0
Mycoplasma_gallisepticum_NC96_1596-4-2P 0
Mycoplasma_gallisepticum_NC95_13295-2-2P 0
Mycoplasma_gallisepticum_VA94_7994-1-7P 0
Mycoplasma_gallisepticum_S6 0
Mycoplasma_gallisepticum_str._R(high) 0
Mycoplasma_gallisepticum_str._R(low) 0
Gordonibacter_pamelaeae_7-10-1-b 0
Adlercreutzia_equolifaciens_DSM_19450 0
Frankia_sp._EuI1c 0
Frankia_sp._CcI3 0
Propionibacterium_avidum_44067 0
Propionibacterium_acnes_ATCC_11828 0
Propionibacterium_acnes_TypeIA2_P.acn31 0
Propionibacterium_acnes_TypeIA2_P.acn17 0
Propionibacterium_acnes_TypeIA2_P.acn33 0
Propionibacterium_acnes_C1 0
Propionibacterium_acnes_HL096PA1 0
Propionibacterium_acnes_6609 0
Propionibacterium_acnes_266 0
Propionibacterium_acnes_KPA171202 0
Propionibacterium_acidipropionici_ATCC_4875 0
Actinoplanes_friuliensis_DSM_7358 0
Dehalococcoides_mccartyi_GY50 0
Dehalococcoides_mccartyi_DCMB5 0
Dehalococcoides_mccartyi_BTF08 0
Dehalococcoides_sp._GT 0
Dehalococcoides_sp._VS 0
Dehalococcoides_sp._CBDB1 0
Chthonomonas_calidirosea_T49 0
Deinococcus_peraridilitoris_DSM_19664 0
Thermus_oshimai_JL-2 0
Thermus_thermophilus_JL-18 0
Thermus_thermophilus_SG0.5JP17-16 0
Thermus_thermophilus_HB8 0
Erysipelothrix_rhusiopathiae_SY1027 0
Eubacterium_siraeum_V10Sc8a 0
Clostridium_thermocellum_DSM_1313 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 0
Sulfobacillus_acidophilus_TPY 0
Clostridium_acidurici_9a 0
Desulfosporosinus_meridiei_DSM_13257 0
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Desulfitobacterium_hafniense_DCB-2 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Candidatus_Arthromitus_sp._SFB-rat-Yit 0
Candidatus_Arthromitus_sp._SFB-mouse-Yit 0
Clostridium_sp._SY8519 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_tetani_genome_12124569 0
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_E3_str._Alaska_E43 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Thermoanaerobacterium_thermosaccharolyticum_M0795 0
Thermacetogenium_phaeum_DSM_12270 0
Thermoanaerobacter_sp._X513 0
Halobacteroides_halobius_DSM_5150 0
Carnobacterium_maltaromaticum_LMA28 0
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_mundtii_QU_25 0
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Enterococcus_faecalis_str._Symbioflor_1 0
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_OG1RF 0
Enterococcus_faecalis_V583 0
Leuconostoc_carnosum_JB16 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Leuconostoc_gelidum_JB7 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 0
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_johnsonii_N6.2 0
Lactobacillus_johnsonii_DPC_6026 0
Lactobacillus_johnsonii_NCC_533 0
Lactobacillus_salivarius_UCC118 0
Lactobacillus_fermentum_F-6 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 0
Lactobacillus_reuteri_SD2112 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 0
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 0
Lactobacillus_brevis_KB290 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Pediococcus_pentosaceus_SL4 0
Lactococcus_garvieae_Lg2 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_KF147 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_anginosus_C1051 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 0
Streptococcus_lutetiensis_033 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_iniae_SF1 0
Streptococcus_parasanguinis_FW213 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN994039 0
Streptococcus_pneumoniae_SPN034183 0
Streptococcus_pneumoniae_SPN034156 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_INV200 0
Streptococcus_pneumoniae_OXC141 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_G54 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_R6 0
Streptococcus_pneumoniae_TIGR4 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_2-22 0
Streptococcus_agalactiae_SA20-06 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_mutans_GS-5 0
Streptococcus_mutans_LJ23 0
Streptococcus_mutans_UA159 0
Streptococcus_thermophilus_MN-ZLW-002 0
Streptococcus_thermophilus_JIM_8232 0
Streptococcus_thermophilus_ND03 0
Streptococcus_thermophilus_CNRZ1066 0
Streptococcus_thermophilus_LMG_18311 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Streptococcus_salivarius_CCHSS3 0
Streptococcus_salivarius_JIM8777 0
Exiguobacterium_antarcticum_B7 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 0
Thermobacillus_composti_KWC4 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_larvae_subsp._larvae_DSM_25430 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Listeria_monocytogenes_EGD_sequence 0
Listeria_monocytogenes_N53-1 0
Listeria_monocytogenes_La111 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC2376 0
Listeria_monocytogenes_SLCC5850 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2479 0
Listeria_monocytogenes_SLCC7179 0
Listeria_monocytogenes_SLCC2540 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Listeria_monocytogenes_08-5923 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_10403S 0
Listeria_monocytogenes_J0161 0
Listeria_monocytogenes_Finland_1998 0
Listeria_monocytogenes_FSL_R2-561 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 0
Geobacillus_sp._C56-T3 0
Geobacillus_sp._Y4.1MC1 0
Geobacillus_sp._Y412MC52 0
Geobacillus_sp._Y412MC61 0
Amphibacillus_xylanus_NBRC_15112 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 0
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 0
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 0
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_amyloliquefaciens_CC178 0
Bacillus_amyloliquefaciens_Y2 0
Bacillus_amyloliquefaciens_IT-45 0
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_LL3 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_amyloliquefaciens_DSM_7 0
Bacillus_licheniformis_9945A 0
Bacillus_subtilis_PY79 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_QB928 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BAB-1 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 0
Bacillus_subtilis_subsp._subtilis_6051-HGW 0
Bacillus_subtilis_subsp._spizizenii_TU-B-10 0
Bacillus_subtilis_subsp._spizizenii_str._W23 0
Bacillus_subtilis_subsp._natto_BEST195 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_HD-771 0
Bacillus_thuringiensis_HD-789 0
Bacillus_thuringiensis_MC28 0
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_YBT-1518 0
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_B4264 0
Bacillus_cereus_G9842 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_cereus_ATCC_14579 0
Bacillus_cereus_ATCC_10987 0
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Bacillus_coagulans_36D1 0
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pseudintermedius_ED99 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_lugdunensis_N920143 0
Staphylococcus_warneri_SG1 0
Staphylococcus_epidermidis_ATCC_12228 0
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_M1 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_ST228/18412 0
Staphylococcus_aureus_ST228/18341 0
Staphylococcus_aureus_ST228/16125 0
Staphylococcus_aureus_ST228/16035 0
Staphylococcus_aureus_ST228/15532 0
Staphylococcus_aureus_ST228/10497 0
Staphylococcus_aureus_ST228/10388 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 0
Staphylococcus_aureus_subsp._aureus_VC40 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED133 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_55/2053 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 0
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MSSA476 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_MW2 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_COL 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Chlorobium_phaeobacteroides_BS1 0
Rhodothermus_marinus_SG0.5JP17-172 0
Echinicola_vietnamensis_DSM_17526 0
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Prevotella_dentalis_DSM_3688 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Bacteroides_xylanisolvens_XB1A 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Candidatus_Sulcia_muelleri_CARI 0
Nonlabens_dokdonensis_DSW-6 0
Psychroflexus_torquis_ATCC_700755 0
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-CH-1 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Blattabacterium_sp._(Panesthia_angustipennis_spadica)_Blattabacterium_sp._(Panesthia_angustipennis_spadica)_str._BPAA 0
Blattabacterium_sp._(Blaberus_giganteus) 0
Blattabacterium_sp._(Blatta_orientalis)_Blattabacterium_sp._(Blatta_orientalis)_str._Tarazona 0
Blattabacterium_sp._(Periplaneta_americana)_str._BPLAN 0
Blattabacterium_sp._(Cryptocercus_punctulatus)_str._Cpu 0
Blattabacterium_sp._(Mastotermes_darwiniensis)_str._MADAR 0
Singulisphaera_acidiphila_DSM_18658 0
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Borrelia_garinii_NMJW1 0
Borrelia_garinii_BgVir 0
Borrelia_afzelii_HLJ01 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_CA382 0
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Borrelia_burgdorferi_ZS7 0
Borrelia_miyamotoi_LB-2001 0
Treponema_pedis_str._T_A4 0
Treponema_pallidum_str._Fribourg-Blanc 0
Treponema_pallidum_subsp._pertenue_str._Gauthier 0
Treponema_pallidum_subsp._pertenue_str._CDC2 0
Treponema_pallidum_subsp._pertenue_str._SamoaD 0
Treponema_pallidum_subsp._pallidum_str._Mexico_A 0
Treponema_pallidum_subsp._pallidum_str._Chicago 0
Treponema_pallidum_subsp._pallidum_DAL-1 0
Treponema_pallidum_subsp._pallidum_str._Nichols 0
Spirochaeta_thermophila_DSM_6578 0
Thermotoga_maritima_MSB8 0
Hydrogenobacter_thermophilus_TK-6 0
Leptospirillum_ferriphilum_ML-04 0
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 0
Fusobacterium_nucleatum_subsp._animalis_4_8 0
Bdellovibrio_exovorus_JSS 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_RM1221 0
Campylobacter_jejuni_subsp._jejuni_00-2544 0
Campylobacter_jejuni_subsp._jejuni_00-2538 0
Campylobacter_jejuni_subsp._jejuni_00-2426 0
Campylobacter_jejuni_subsp._jejuni_00-2425 0
Campylobacter_jejuni_subsp._jejuni_PT14 0
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 0
Campylobacter_jejuni_subsp._jejuni_S3 0
Campylobacter_jejuni_subsp._jejuni_M1 0
Campylobacter_jejuni_subsp._jejuni_IA3902 0
Campylobacter_jejuni_subsp._jejuni_81116 0
Campylobacter_jejuni_subsp._jejuni_81-176 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 0
Campylobacter_coli_76339 0
Campylobacter_coli_15-537360 0
Campylobacter_coli_CVM_N29710 0
Helicobacter_cetorum_MIT_99-5656 0
Helicobacter_pylori_BM012S 0
Helicobacter_pylori_BM012A 0
Helicobacter_pylori_SouthAfrica20 0
Helicobacter_pylori_UM298 0
Helicobacter_pylori_UM066 0
Helicobacter_pylori_UM037 0
Helicobacter_pylori_UM299 0
Helicobacter_pylori_UM032 0
Helicobacter_pylori_OK310 0
Helicobacter_pylori_OK113 0
Helicobacter_pylori_Rif2 0
Helicobacter_pylori_Rif1 0
Helicobacter_pylori_HUP-B14 0
Helicobacter_pylori_PeCan18 0
Helicobacter_pylori_Shi169 0
Helicobacter_pylori_Shi112 0
Helicobacter_pylori_Shi417 0
Helicobacter_pylori_Aklavik86 0
Helicobacter_pylori_Aklavik117 0
Helicobacter_pylori_SNT49 0
Helicobacter_pylori_Puno135 0
Helicobacter_pylori_Puno120 0
Helicobacter_pylori_ELS37 0
Helicobacter_pylori_Gambia94/24 0
Helicobacter_pylori_SouthAfrica7 0
Helicobacter_pylori_India7 0
Helicobacter_pylori_Lithuania75 0
Helicobacter_pylori_2017 0
Helicobacter_pylori_2018 0
Helicobacter_pylori_908 0
Helicobacter_pylori_F57 0
Helicobacter_pylori_F30 0
Helicobacter_pylori_F16 0
Helicobacter_pylori_Sat464 0
Helicobacter_pylori_Cuz20 0
Helicobacter_pylori_PeCan4 0
Helicobacter_pylori_SJM180 0
Helicobacter_pylori_B8 0
Helicobacter_pylori_52 0
Helicobacter_pylori_v225d 0
Helicobacter_pylori_83 0
Helicobacter_pylori_35A 0
Helicobacter_pylori_P12 0
Helicobacter_pylori_G27 0
Helicobacter_pylori_Shi470 0
Helicobacter_pylori_HPAG1 0
Helicobacter_pylori_51 0
Helicobacter_pylori_F32 0
Helicobacter_pylori_J99 0
Helicobacter_pylori_26695 0
Helicobacter_pylori_26695 0
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfobacula_toluolica_Tol2 0
Lawsonia_intracellularis_N343 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Caldisphaera_lagunensis_DSM_15908 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   3

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   21
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 6
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3
Guillardia_theta_(nucleomorph) 0
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
TargetDB__(Targets) 14
Core_Eukaryotic_Genes_458_(CEGMA) 6
Protozoadb_2010_08_(Protozoadb) 53
STRING_v9.0.5_(STRING) 250
Uniprot_2018_03_genome 9837
NCBI_2017_08_genome 1478
NCBI_viral_sequences_(Viral) 0
Protein_Data_Bank_(all_PDB_sequenc) 21

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.