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Home > SCOP hierarchy > Domain combination - _gap_,54791,57756,_gap_

Domain combinations for _gap_,54791,57756,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54791 - Eukaryotic type KH-domain (KH-domain type I)
57756 - Retrovirus zinc finger-like domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Saccoglossus_kowalevskii_v3.0 10

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 1

Crassostrea_gigas_22 (Pacific oyster) 1

Lottia_gigantea_ (Owl limpet) 1

Capitella_sp._I_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Bombyx_mori_ (Domestic silkworm) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 2

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_pseudoobscura_2.13 1

Drosophila_suzukii 2

Drosophila_melanogaster_76_5 (Fruit fly) 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Anopheles_darlingi_22 (American malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Strigamia_maritima_22 1

Sarcoptes_scabiei 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Meloidogyne_hapla_ 1

Onchocerca_volvulus_22 0

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 1

Caenorhabditis_briggsae_2 1

Trichinella_spiralis_22 1

Hymenolepis_microstoma_ 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Taenia_solium_ (Pork tapeworm) 1

Mnemiopsis_leidyi (Sea walnut) 1

Thelohanellus_kitauei 1

Amphimedon_queenslandica 1

Proterospongia_sp._ATCC_50818_ 1

Monosiga_brevicollis_ 1

Sphaeroforma_arctica_JP610_ 1

Capsaspora_owczarzaki_ATCC_30864_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 1

Mortierella_verticillata_NRRL_6337_ 1

Phycomyces_blakesleeanus_ 1

Rhizopus_oryzae_RA_99-880_ 1

Rhizomucor_miehei_CAU432_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 1

Ustilago_maydis_ 1

Mixia_osmundae_IAM_14324_v1.0 1

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1

Rhodotorula_graminis_WP1_v1.0 1

Sporobolomyces_roseus_IAM_13481_ 1

Microbotryum_violaceum_22 1

Wallemia_sebi_v1.0 1

Serpula_lacrymans_var._lacrymans_S7.9_ 1

Coniophora_puteana 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Agaricus_bisporus_var._bisporus_ 1

Schizophyllum_commune_ 1

Heterobasidion_annosum_ 1

Gloeophyllum_trabeumv1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Fomitiporia_mediterranea_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Postia_placenta_ 2

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 1

Trametes_versicolor_v1.0 1

Tremella_mesenterica_ (Witches' butter) 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Magnaporthe_poae_ATCC_64411_22 1

Magnaporthe_grisea_70-15_ 1

Podospora_anserina_ 1

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 1

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 1

Glomerella_graminicola_22 1

Fusarium_graminearum_ 0

Fusarium_verticillioides_7600_ 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 1

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Blumeria_graminis_22 1

Leptosphaeria_maculans_22 1

Alternaria_brassicicola_ 1

Pyrenophora_teres_f._teres_22 1

Pyrenophora_tritici-repentis_ 1

Stagonospora_nodorum_ 1

Mycosphaerella_graminicola_IPO323_ 1

Septoria_musiva_v1.0 1

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Aspergillus_fumigatus_Af293 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_niger_22 1

Aspergillus_flavus_NRRL3357_ 1

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 2

Tuber_melanosporum_Vittad_ (Perigord truffle) 2

Pichia_membranifaciensv1.0 1

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_dubliniensis_CD36_ 1

Candida_tropicalis_MYA-3404_ 1

Candida_parapsilosis_ 1

Candida_albicans_SC5314 1

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Pichia_stipitis_CBS_6054_ 1

Candida_guilliermondii_ATCC_6260_ 1

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1

Debaromyces_hansenii 1

Wickerhamomyces_anomalus 1

Pichia_pastoris_GS115_ 1

Yarrowia_lipolytica_CLIB122 1

Candida_lusitaniae_ATCC_42720_ 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Vanderwaltozyma_polyspora_DSM_70294_ 1

Candida_glabrata_CBS138 1

Kluyveromyces_thermotolerans_CBS_6340 1

Lachancea_kluyveri_ 1

Kluyveromyces_waltii 1

Ashbya_gossypii_ATCC_10895_ 1

Zygosaccharomyces_rouxii_ 1

Saccharomyces_paradoxus_MIT 1

Saccharomyces_bayanus_MIT 1

Schizosaccharomyces_cryophilus_OY26_22 1

Schizosaccharomyces_octosporus_yFS286_ 1

Schizosaccharomyces_japonicus_yFS275_ 1

Schizosaccharomyces_pombe (Fission yeast) 1

Catenaria_anguillulae_PL171_v1.0 1

Allomyces_macrogynus_ATCC_38327_ 2

Spizellomyces_punctatus_DAOM_BR117_ 1

Pinus_taeda (Loblolly pine) 0

Picea_abies (Norway spruce) 0

Theobroma_cacao_B97-61/B2_v1 (Cacao) 0

Gossypium_raimondii_v221 0

Citrus_clementina_v165 0

Citrus_sinensis_v154 (Sweet orange) 0

Thellungiella_halophila_v173 0

Capsella_rubella_v183 0

Arabidopsis_lyrata_ (Lyrate rockcress) 0

Arabidopsis_thaliana_10 (Thale cress) 0

Carica_papaya_ (Papaya) 1

Medicago_truncatula_ (Barrel medic) 0

Phaseolus_vulgaris_v186 (French bean) 0

Glycine_max_v109 (Soybean) 0

Cucumis_sativus_v122 (Cucumber) 0

Fragaria_vesca_ (Wild strawberry) 0

Malus_domestica_v196 (Apple) 0

Prunus_persica_v139 (Peach) 0

Linum_usitatissimum_v200 (Flax) 0

Manihot_esculenta_v147 (Cassava) 0

Populus_trichocarpa_v156 (Black cottonwood) 0

Mimulus_guttatus_v140 (Spotted monkey flower) 0

Solanum_lycopersicum_v.2.3 (Tomato) 0

Solanum_tuberosum_ (Potato) 0

Actinidia_chinensis_Hongyang_ 0

Aquilegia_coerulea_v195 0

Triticum_urartu_22 0

Triticum_aestivum_22 (Bread wheat) 0

Aegilops_tauschii_22 0

Brachypodium_distachyon_ (Stiff brome) 0

Oryza_meridionalis_22 0

Oryza_glumaepatula_22 0

Oryza_glaberrima (African rice) 0

Oryza_punctata_22 0

Oryza_nivara_22 0

Oryza_brachyantha_22 (Malo sina) 0

Panicum_virgatum_v202 (Switchgrass) 0

Setaria_italica_v164 (Foxtail millet) 0

Zea_mays_subsp._mays_ (Maize) 0

Zea_mays_v181 (Maize) 0

Sorghum_bicolor_ (Sorghum) 0

Musa_balbisiana (Balbis banana) 0

Amborella_trichopoda_22 0

Physcomitrella_patens 1

Ostreococcus_tauri_ 0

Bathycoccus_prasinos_ 1

Micromonas_pusilla_CCMP1545_v3.0 0

Porphyridium_purpureum_02_2012 1

Bigelowiella_natans_CCMP2755_22 0

Cyanophora_paradoxa_ 1

Ectocarpus_siliculosus 0

Albugo_laibachii_22 2

Pythium_iwayamai_DAOM_BR242034_22 1

Pythium_arrhenomanes_ATCC_12531_22 1

Pythium_ultimum_v1.7-2 1

Pythium_aphanidermatum_DAOM_BR444_22 1

Pythium_irregulare_DAOM_BR486_22 1

Pythium_vexans_DAOM_BR484_22 1

Phytophthora_ramorum_1.1 (Sudden oak death agent) 1

Phytophthora_sojae_1.1 1

Phytophthora_infestans_T30-4_ 1

Thalassiosira_pseudonana_CCMP1335 1

Perkinsus_marinus_ATCC_50983_ 1

Paramecium_tetraurelia_ 2

Tetrahymena_thermophila_SB210_1_ 1

Cryptosporidium_hominis 1

Cryptosporidium_muris 1

Cryptosporidium_parvum_Iowa_II 1

Neospora_caninum 1

Toxoplasma_gondii_VEG 1

Toxoplasma_gondii_ME49 1

Babesia_bovis_T2Bo_ 2

Theileria_parva__ 1

Plasmodium_falciparum_3D7_ 1

Plasmodium_vivax_SaI-1_7.0 1

Plasmodium_knowlesi_strain_H_ 1

Plasmodium_yoelii_ssp._yoelii_1_ 1

Plasmodium_chabaudi_ 1

Plasmodium_berghei_ANKA_ 1

Symbiodinium_minutum_clade_B1_v1.2 1

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Strains
Genome Number

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 1

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 1

Ascaris_suum_Victoria/Ghent_ (Pig roundworm) 1

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 1

Cryptococcus_neoformans_var._grubii_H99_ 1

Cryptococcus_neoformans_B-3501A_ 1

Cryptococcus_neoformans_JEC21_ 1

Paracoccidioides_brasiliensis_Pb03_ 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_3703_ 1

Coccidioides_immitis_RMSCC_2394_ 1

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 1

Histoplasma_capsulatum_H143 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 1

Candida_albicans_WO-1_ 1

Saccharomyces_cerevisiae_LalvinQA23 1

Schizosaccharomyces_pombe_972h-_ 1

Batrachochytrium_dendrobatidis_JEL423_ 1

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 0

Hordeum_vulgare_22 (Domesticated barley) 0

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 0

Neospora_caninum_Nc-Liverpool_6.2 1

Plasmodium_falciparum_HB3_ 1

Plasmodium_falciparum_Dd2_ 1

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Longest transcript per gene
Genome Number

Drosophila_melanogaster_69_5 (Fruit fly) 1

Caenorhabditis_elegans_69_215 (Roundworm) 1

Arabidopsis_thaliana_10 (Thale cress) 0

Others
Genome Number

Loa_loa_v3.3_(Request) (Eye worm) 1

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 1

Lotus_japonicus__(Early_assembly) 0

Malus_x_domestica_(Duplicate) (Apple) 0

Ricinus_communis__(Early_assembly) (Castor bean) 0

Nicotiana_benthamiana_0.4.4_(Early_draft) 0

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 0

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 0

Protozoadb_2010_08_(Protozoadb) 18

TargetDB__(Targets) 2

STRING_v9.0.5_(STRING) 56

NCBI_2017_08_genome 394

Uniprot_2018_03_genome 8991

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Domain combinations for _gap_,54791,57756,_gap_ superfamilies in groups of genomes