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Domain combinations for _gap_,54897,52743,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54897 - Protease propeptides/inhibitors
52743 - Subtilisin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Saccoglossus_kowalevskii_v3.0 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Oikopleura_dioica 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 1
Laccaria_bicolor_S238N-H82_ 1
Postia_placenta_ 2
Dichomitus_squalens 1
Daldinia_eschscholzii_EC12_v1.0 0
Chaetomium_globosum_CBS_148.51_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_reesei_1.2 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Arthroderma_benhamiae_CBS_112371_ 1
Aspergillus_zonatus_v1.0 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_wentii_v1.0 1
Selaginella_moellendorffii_ 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 3
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   9
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   3
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   2
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 2
Oryza_nivara_22 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Panicum_virgatum_v202   (Switchgrass)   1
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   3
Zea_mays_v181   (Maize)   3
Sorghum_bicolor_   (Sorghum)   1
Amborella_trichopoda_22 1
Cyanophora_paradoxa_ 1
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 2
Hyaloperonospora_arabidopsidis_22 2
Acidimicrobium_ferrooxidans_DSM_10331 2
Acidothermus_cellulolyticus_11B 1
Catenulispora_acidiphila_DSM_44928 3
Frankia_alni_ACN14a 1
Kitasatospora_setae_KM-6054 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Kytococcus_sedentarius_DSM_20547 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 3
Arthrobacter_sp._FB24 1
Candidatus_Solibacter_usitatus_Ellin6076 2
Granulicella_tundricola_MP5ACTX9 9
Granulicella_mallensis_MP5ACTX8 10
Candidatus_Koribacter_versatilis_Ellin345 4
Terriglobus_saanensis_SP1PR4 4
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 4
Stigmatella_aurantiaca_DW4/3-1 1
Azorhizobium_caulinodans_ORS_571 1
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 0
Shewanella_denitrificans_OS217 0
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_sp._MR-4 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 0
Colwellia_psychrerythraea_34H 1
Acidilobus_saccharovorans_345-15 2
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 2
Acidianus_hospitalis_W1 2
Sulfolobus_tokodaii_str._7 2
Sulfolobus_islandicus_Y.N.15.51 2
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 2
Caldivirga_maquilingensis_IC-167 1
Methanocella_arvoryzae_MRE50 1
Picrophilus_torridus_DSM_9790 1
Aciduliprofundum_sp._MAR08-339 0
Aciduliprofundum_boonei_T469 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Clavibacter_michiganensis_subsp._sepedonicus 2
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Chthonomonas_calidirosea_T49 2
Clostridium_pasteurianum_BC1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Caldisphaera_lagunensis_DSM_15908 1
Sulfolobus_islandicus_LAL14/1 2
Sulfolobus_islandicus_REY15A 2
Sulfolobus_islandicus_HVE10/4 2
Sulfolobus_islandicus_Y.G.57.14 2
Sulfolobus_islandicus_L.S.2.15 2
Sulfolobus_islandicus_M.16.27 2
Sulfolobus_islandicus_M.14.25 2
Sulfolobus_islandicus_M.16.4 2
Sulfolobus_islandicus_L.D.8.5 2
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 2
Sulfolobus_acidocaldarius_N8 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
NCBI_plasmid_sequences_(Plasmids) 4
Uniprot_2018_03_genome 5724
NCBI_2017_08_genome 1225
TargetDB__(Targets) 1
Protein_Data_Bank_(all_PDB_sequenc) 3
STRING_v9.0.5_(STRING) 76

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