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  Home > SCOP hierarchy > Domain combination - _gap_,54928,_gap_,54928,_gap_

Domain combinations for _gap_,54928,_gap_,54928,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   31
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   8
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   11
Macaca_mulatta_76_1   (Rhesus monkey)   9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   10
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   6
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   6
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   10
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   9
Pteropus_vampyrus_76_1   (Large flying fox)   9
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   9
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   5
Xenopus_laevis_   (African clawed frog)   12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   15
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9
Takifugu_rubripes_76_4   (Torafugu)   16
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12
Oryzias_latipes_76_1   (Japanese medaka)   11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8
Poecilia_formosa_76   (Amazon molly)   11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   14
Astyanax_mexicanus_76   (Mexican tetra)   13
Danio_rerio_76_9   (Zebrafish)   20
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   13
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 13
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 6
Capitella_sp._I_ 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 11
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 7
Drosophila_suzukii 10
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 6
Drosophila_sechellia_1.3 6
Drosophila_melanogaster_76_5   (Fruit fly)   19
Drosophila_erecta_1.3 8
Drosophila_ananassae_1.3 6
Drosophila_virilis_1.2 9
Drosophila_mojavensis_1.3 7
Megaselia_scalaris_22 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   6
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5
Acyrthosiphon_pisum_   (Pea aphid)   7
Rhodnius_prolixus_22 4
Daphnia_pulex_   (Common water flea)   7
Strigamia_maritima_22 6
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   6
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 12
Caenorhabditis_remanei_ 7
Caenorhabditis_elegans_76_235   (Roundworm)   9
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 4
Hymenolepis_microstoma_ 7
Echinococcus_multilocularis_ 7
Echinococcus_granulosus_ 8
Taenia_solium_   (Pork tapeworm)   5
Schistosoma_mansoni_ 7
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 5
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 3
Mortierella_verticillata_NRRL_6337_ 3
Phycomyces_blakesleeanus_ 5
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 5
Rhizomucor_miehei_CAU432_ 6
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 4
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 7
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 6
Sporobolomyces_roseus_IAM_13481_ 7
Microbotryum_violaceum_22 9
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 5
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 5
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   7
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 7
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 8
Stereum_hirsutum_FP-91666_SS1__v1.0 6
Heterobasidion_annosum_ 5
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 6
Fomitiporia_mediterranea_v1.0 6
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 9
Wolfiporia_cocos_MD-104_SS10__v1.0 6
Fomitopsis_pinicolav1.0 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7
Phanerochaete_chrysosporium_RP-78_2.1 5
Dichomitus_squalens 7
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   5
Daldinia_eschscholzii_EC12_v1.0 5
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 6
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 5
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 5
Fusarium_graminearum_ 5
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 7
Trichoderma_atroviride_ 7
Trichoderma_citrinoviride_v1.0 5
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   7
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 6
Didymella_exigua_CBS_183.55_v1.0 5
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5
Cochliobolus_victoriae_FI3_v1.0 6
Cochliobolus_carbonum_26-R-13_v1.0 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 6
Pyrenophora_tritici-repentis_ 5
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 5
Septoria_musiva_v1.0 6
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 6
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 5
Aspergillus_zonatus_v1.0 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 7
Penicillium_chrysogenum_v1.0 7
Aspergillus_acidus_v1.0 5
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 7
Aspergillus_sydowii_v1.0 5
Aspergillus_versicolor_v1.0 5
Aspergillus_glaucus 5
Aspergillus_carbonarius_ITEM_5010_ 7
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 6
Aspergillus_tubingensis_v1.0 5
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 5
Aspergillus_clavatus_NRRL_1_ 7
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 5
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 4
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 5
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 5
Saccharomyces_paradoxus_MIT 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   5
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 10
Schizosaccharomyces_octosporus_yFS286_ 9
Schizosaccharomyces_japonicus_yFS275_ 5
Schizosaccharomyces_pombe   (Fission yeast)   7
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 8
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 3
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 2
Selaginella_moellendorffii_ 17
Pinus_taeda   (Loblolly pine)   12
Picea_abies   (Norway spruce)   8
Eucalyptus_grandis_v201   (Rose gum)   17
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Gossypium_raimondii_v221 65
Citrus_clementina_v165 20
Citrus_sinensis_v154   (Sweet orange)   33
Thellungiella_halophila_v173 18
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   27
Capsella_rubella_v183 17
Arabidopsis_lyrata_   (Lyrate rockcress)   17
Arabidopsis_thaliana_10   (Thale cress)   27
Carica_papaya_   (Papaya)   9
Medicago_truncatula_   (Barrel medic)   33
Phaseolus_vulgaris_v186   (French bean)   16
Glycine_max_v109   (Soybean)   30
Cucumis_sativus_v122   (Cucumber)   14
Fragaria_vesca_   (Wild strawberry)   9
Malus_domestica_v196   (Apple)   21
Prunus_persica_v139   (Peach)   12
Linum_usitatissimum_v200   (Flax)   18
Manihot_esculenta_v147   (Cassava)   22
Populus_trichocarpa_v156   (Black cottonwood)   16
Vitis_vinifera_   (Wine grape)   7
Mimulus_guttatus_v140   (Spotted monkey flower)   15
Solanum_lycopersicum_v.2.3   (Tomato)   11
Solanum_tuberosum_   (Potato)   22
Actinidia_chinensis_Hongyang_ 19
Aquilegia_coerulea_v195 24
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   28
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   15
Oryza_barthii_22   (African wild rice)   16
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 13
Oryza_glaberrima   (African rice)   14
Oryza_punctata_22 18
Oryza_nivara_22 21
Oryza_brachyantha_22   (Malo sina)   16
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   25
Oryza_sativa_v193   (Rice)   25
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   14
Setaria_italica_v164   (Foxtail millet)   19
Zea_mays_subsp._mays_   (Maize)   24
Zea_mays_v181   (Maize)   25
Sorghum_bicolor_   (Sorghum)   12
Musa_balbisiana   (Balbis banana)   21
Musa_acuminata_22   (Wild Malaysian banana)   15
Amborella_trichopoda_22 9
Physcomitrella_patens 9
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 7
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 3
Volvox_carteri_v199 4
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 5
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 4
Giardia_lamblia_2.3 0
Leishmania_mexicana_2.4 5
Leishmania_major_strain_Friedlin_ 5
Leishmania_infantum_JPCM5_2.4 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 6
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 5
Trypanosoma_congolense_2.4 6
Trypanosoma_brucei_gambiense_v4.1 5
Trypanosoma_brucei_TREU927_v4.1 5
Ectocarpus_siliculosus 6
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 4
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 4
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 15
Paramecium_tetraurelia_ 6
Tetrahymena_thermophila_SB210_1_ 6
Ichthyophthirius_multifiliis_strain_G5_ 3
Cryptosporidium_hominis 1
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 5
Toxoplasma_gondii_VEG 10
Toxoplasma_gondii_ME49 10
Toxoplasma_gondii_GT1 9
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 3
Theileria_annulata 3
Plasmodium_falciparum_3D7_ 5
Plasmodium_vivax_SaI-1_7.0 5
Plasmodium_knowlesi_strain_H_ 5
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 5
Plasmodium_berghei_ANKA_ 5
Symbiodinium_minutum_clade_B1_v1.2 12
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 3
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 3

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   19
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   8
Cryptococcus_neoformans_var._grubii_H99_ 6
Cryptococcus_neoformans_B-3501A_ 7
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 5
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 6
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 5
Saccharomyces_cerevisiae_PW5 5
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 4
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 5
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 6
Saccharomyces_cerevisiae_W303 5
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_T73 3
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_YJM789_ 5
Saccharomyces_cerevisiae_YJM789 5
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5
Schizosaccharomyces_pombe_972h-_ 7
Batrachochytrium_dendrobatidis_JEL423_ 5
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   9
Hordeum_vulgare_22   (Domesticated barley)   19
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   13
Trypanosoma_brucei_Lister_427_v4.1 5
Neospora_caninum_Nc-Liverpool_6.2 5
Plasmodium_falciparum_HB3_ 5
Plasmodium_falciparum_Dd2_ 4

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   6
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_69_3   (Small-eared galago)   8
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   8
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   9
Pteropus_vampyrus_69_1   (Large flying fox)   9
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   12
Danio_rerio_69_9   (Zebrafish)   12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5
Arabidopsis_thaliana_10   (Thale cress)   17

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   32
Homo_sapiens__(NCBI_version)   (Human)   15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 1
Lotus_japonicus__(Early_assembly) 5
Malus_x_domestica_(Duplicate)   (Apple)   21
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 17
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   11
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
TargetDB__(Targets) 16
Protozoadb_2010_08_(Protozoadb) 126
STRING_v9.0.5_(STRING) 659
Uniprot_2018_03_genome 86922
NCBI_2017_08_genome 11209

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.