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Home > SCOP hierarchy > Domain combination - _gap_,54928,_gap_,82199

Domain combinations for _gap_,54928,_gap_,82199 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54928 - RNA-binding domain, RBD
82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 5

Pan_troglodytes_76_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 2

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 2

Papio_anubis_76 (Olive baboon) 2

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 6

Otolemur_garnettii_76_3 (Small-eared galago) 2

Mus_musculus_76_38 (House mouse) 5

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Sus_scrofa_76_10.2 (Pig) 2

Bos_taurus_76_3.1 (Cattle) 2

Ovis_aries_76_3.1 (Sheep) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Canis_familiaris_76_3.1 (Dog) 3

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 1

Pteropus_vampyrus_76_1 (Large flying fox) 1

Loxodonta_africana_76_3 (African savanna elephant) 2

Echinops_telfairi_76 (Small Madagascar hedgehog) 0

Macropus_eugenii_76_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_76_2.0 (Green anole) 1

Xenopus_laevis_ (African clawed frog) 3

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 3

Latimeria_chalumnae_76_1 (Coelacanth) 2

Lepisosteus_oculatus_76 (Spotted gar) 2

Gadus_morhua_76_1 (Atlantic cod) 2

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 4

Takifugu_rubripes_76_4 (Torafugu) 7

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 2

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 3

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 3

Danio_rerio_76_9 (Zebrafish) 3

Oikopleura_dioica 1

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 1

Adineta_vaga 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Nasonia_vitripennis_ (Jewel wasp) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 1

Drosophila_willistoni_1.3 1

Drosophila_pseudoobscura_2.13 1

Drosophila_suzukii 0

Drosophila_yakuba_1.3 1

Drosophila_sechellia_1.3 1

Drosophila_melanogaster_76_5 (Fruit fly) 9

Drosophila_erecta_1.3 1

Drosophila_virilis_1.2 1

Drosophila_mojavensis_1.3 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Anopheles_darlingi_22 (American malaria mosquito) 1

Anopheles_gambiae_49_3j (African malaria mosquito) 1

Tribolium_castaneum_3.0 (Red flour beetle) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Rhodnius_prolixus_22 1

Strigamia_maritima_22 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Pristionchus_pacificus_ 1

Meloidogyne_incognita_ (Southern root-knot nematode) 1

Meloidogyne_hapla_ 1

Onchocerca_volvulus_22 1

Caenorhabditis_brenneri_ 1

Caenorhabditis_remanei_ 1

Caenorhabditis_elegans_76_235 (Roundworm) 2

Trichinella_spiralis_22 1

Hymenolepis_microstoma_ 1

Schistosoma_mansoni_ 1

Mnemiopsis_leidyi (Sea walnut) 1

Thelohanellus_kitauei 1

Acropora_digitifera_v1.0 1

Hydra_vulgaris 1

Proterospongia_sp._ATCC_50818_ 1

Capsaspora_owczarzaki_ATCC_30864_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 1

Mortierella_verticillata_NRRL_6337_ 1

Rhizopus_oryzae_RA_99-880_ 1

Malassezia_globosa_CBS_7966_ 2

Mixia_osmundae_IAM_14324_v1.0 0

Microbotryum_violaceum_22 1

Piloderma_croceum_F_1598_v1.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_tinctorius_Marx_270_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 0

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Hebeloma_cylindrosporum_h7_v2.0 1

Postia_placenta_ 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Magnaporthe_poae_ATCC_64411_22 1

Magnaporthe_grisea_70-15_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 1

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Acremonium_alcalophilumv_1.0 1

Glomerella_graminicola_22 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 1

Blumeria_graminis_22 1

Didymella_exigua_CBS_183.55_v1.0 1

Leptosphaeria_maculans_22 1

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 1

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Pyrenophora_tritici-repentis_ 1

Stagonospora_nodorum_ 1

Zasmidium_cellare_ATCC_36951_v1.0 1

Dothistroma_septosporum 1

Septoria_musiva_v1.0 1

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_verrucosum_HKI_0517_ 1

Arthroderma_benhamiae_CBS_112371_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 1

Aspergillus_zonatus_v1.0 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Penicillium_chrysogenum_v1.0 1

Aspergillus_acidus_v1.0 1

Aspergillus_fumigatus_Af293 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_terreus_NIH2624_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_wentii_v1.0 1

Aspergillus_oryzae_RIB40_ 1

Aspergillus_niger_22 1

Aspergillus_flavus_NRRL3357_ 1

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Hansenula_polymorpha_v2.0 1

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_dubliniensis_CD36_ 1

Candida_albicans_SC5314 1

Lodderomyces_elongisporus_NRRL_YB-4239_ 1

Babjeviella_inositovora_NRRL_Y-12698_v1.0 1

Pichia_stipitis_CBS_6054_ 1

Debaromyces_hansenii 1

Pichia_pastoris_GS115_ 1

Yarrowia_lipolytica_CLIB122 1

Schizosaccharomyces_cryophilus_OY26_22 1

Schizosaccharomyces_octosporus_yFS286_ 1

Schizosaccharomyces_japonicus_yFS275_ 0

Schizosaccharomyces_pombe (Fission yeast) 0

Allomyces_macrogynus_ATCC_38327_ 2

Spizellomyces_punctatus_DAOM_BR117_ 1

Dictyostelium_discoideum 1

Dictyostelium_purpureum_ 1

Cyanidioschyzon_merolae_strain_10D_22 1

Cyanidioschyzon_merolae 1

Porphyridium_purpureum_02_2012 1

Thecamonas_trahens_ATCC_50062_ 1

Symbiodinium_minutum_clade_B1_v1.2 0

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 4

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 9

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 1

Caenorhabditis_elegans_WormBase_WS218__(WormBase) (Roundworm) 2

Cryptococcus_neoformans_var._grubii_H99_ 1

Cryptococcus_neoformans_B-3501A_ 1

Cryptococcus_neoformans_JEC21_ 1

Paracoccidioides_brasiliensis_Pb01_ 1

Paracoccidioides_brasiliensis_Pb03_ 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_3703_ 1

Coccidioides_immitis_RMSCC_2394_ 1

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 1

Candida_albicans_WO-1_ 1

Schizosaccharomyces_pombe_972h-_ 0

Batrachochytrium_dendrobatidis_JEL423_ 1

Batrachochytrium_dendrobatidis_JAM81_ 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_69_3.1 (Western gorilla) 1

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Rattus_norvegicus_69_3.4 (Norway rat) 1

Mus_musculus_69_38 (House mouse) 2

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Canis_familiaris_69_3.1 (Dog) 2

Equus_caballus_69_2 (Horse) 1

Pteropus_vampyrus_69_1 (Large flying fox) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 0

Macropus_eugenii_69_1.0 (Tammar wallaby) 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 2

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 3

Oreochromis_niloticus_69_1.0 (Nile tilapia) 3

Danio_rerio_69_9 (Zebrafish) 3

Drosophila_melanogaster_69_5 (Fruit fly) 1

Caenorhabditis_elegans_69_215 (Roundworm) 1

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 4

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 1

Uniprot_2018_03_genome 7569

NCBI_2017_08_genome 991

TargetDB__(Targets) 2

STRING_v9.0.5_(STRING) 64

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Domain combinations for _gap_,54928,_gap_,82199 superfamilies in groups of genomes