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Domain combinations for _gap_,55008,_gap_,81653,81665,56784 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55008 - HMA, heavy metal-associated domain
81653 - Calcium ATPase, transduction domain A
81665 - Calcium ATPase, transmembrane domain M
56784 - HAD-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Erinaceus_europaeus_76   (Western European hedgehog)   0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Magnaporthe_grisea_70-15_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_dahliae_VdLs.17_ 1
Glomerella_graminicola_22 1
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Botrytis_cinerea_B05.10_ 1
Setosphaeria_turcica_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Septoria_musiva_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Uncinocarpus_reesii_1704_ 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_clavatus_NRRL_1_ 1
Pichia_stipitis_CBS_6054_ 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Eucalyptus_grandis_v201   (Rose gum)   0
Gossypium_raimondii_v221 1
Thellungiella_halophila_v173 1
Capsella_rubella_v183 1
Medicago_truncatula_   (Barrel medic)   2
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   0
Aquilegia_coerulea_v195 1
Triticum_urartu_22 0
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Volvox_carteri_v199 0
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 1
Ectocarpus_siliculosus 1
Albugo_laibachii_22 0
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 1
Phytophthora_sojae_1.1 1
Symbiodinium_minutum_clade_B1_v1.2 2
Guillardia_theta_CCMP2712_v1.0_ 0
Ignavibacterium_album_JCM_16511 1
Salinibacter_ruber_M8 1
Spirosoma_linguale_DSM_74 1
Zobellia_galactanivorans 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_johnsoniae_UW101 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Bdellovibrio_bacteriovorus_HD100 1
Helicobacter_cetorum_MIT_00-7128 1
Helicobacter_acinonychis_str._Sheeba 1
Desulfobacterium_autotrophicum_HRM2 1
Desulfovibrio_magneticus_RS-1 1
Corallococcus_coralloides_DSM_2259 1
Dechloromonas_aromatica_RCB 2
Thauera_sp._MZ1T 2
Pseudogulbenkiania_sp._NH8B 1
Laribacter_hongkongensis_HLHK9 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Rubrivivax_gelatinosus_IL144 2
Burkholderia_rhizoxinica_HKI_454 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 2
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._CCGE1002 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Delftia_acidovorans_SPH-1 1
Variovorax_paradoxus_S110 1
Acidovorax_sp._JS42 1
Herminiimonas_arsenicoxydans 2
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Herbaspirillum_seropedicae_SmR1 2
Bordetella_petrii_DSM_12804 1
Bordetella_avium_197N 1
Methylobacillus_flagellatus_KT 1
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_sp._PP1Y 1
Sphingomonas_sp._MM-1 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_rubrum_F11 1
Xanthobacter_autotrophicus_Py2 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Mesorhizobium_sp._BNC1 1
Psychromonas_ingrahamii_37 1
Idiomarina_loihiensis_L2TR 1
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_sediminis_HAW-EB3 1
Shewanella_denitrificans_OS217 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 1
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Marinomonas_mediterranea_MMB-1 0
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 1
Methylococcus_capsulatus_str._Bath 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Dickeya_dadantii_Ech703 1
Dickeya_zeae_Ech1591 1
Sodalis_glossinidius_str._'morsitans' 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 2
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 2
Pseudomonas_aeruginosa_UCBPP-PA14 2
Pseudomonas_sp._VLB120 1
Sulfolobus_islandicus_Y.N.15.51 1
Salinarchaeum_sp._Harcht-Bsk1 0
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloferax_mediterranei_ATCC_33500 1
Halomicrobium_mukohataei_DSM_12286 1
Natronomonas_pharaonis_DSM_2160 2
Haloarcula_hispanica_ATCC_33960 2
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1
Methanococcus_voltae_A3 0

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Strains
Genome     Number
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Corynebacterium_terpenotabidum_Y-11 1
Salinibacter_ruber_DSM_13855 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Helicobacter_pylori_BM012S 1
Helicobacter_pylori_BM012A 1
Helicobacter_pylori_SouthAfrica20 1
Helicobacter_pylori_UM298 1
Helicobacter_pylori_UM066 1
Helicobacter_pylori_UM037 1
Helicobacter_pylori_UM299 1
Helicobacter_pylori_UM032 1
Helicobacter_pylori_Rif2 1
Helicobacter_pylori_Rif1 1
Helicobacter_pylori_HUP-B14 1
Helicobacter_pylori_Shi112 1
Helicobacter_pylori_Aklavik86 1
Helicobacter_pylori_Aklavik117 1
Helicobacter_pylori_SNT49 1
Helicobacter_pylori_Puno135 1
Helicobacter_pylori_Puno120 1
Helicobacter_pylori_ELS37 1
Helicobacter_pylori_Gambia94/24 1
Helicobacter_pylori_SouthAfrica7 1
Helicobacter_pylori_India7 1
Helicobacter_pylori_Lithuania75 1
Helicobacter_pylori_2017 1
Helicobacter_pylori_2018 1
Helicobacter_pylori_908 1
Helicobacter_pylori_F57 1
Helicobacter_pylori_F30 1
Helicobacter_pylori_F16 1
Helicobacter_pylori_Sat464 1
Helicobacter_pylori_Cuz20 1
Helicobacter_pylori_PeCan4 1
Helicobacter_pylori_SJM180 1
Helicobacter_pylori_B8 1
Helicobacter_pylori_v225d 1
Helicobacter_pylori_83 1
Helicobacter_pylori_35A 1
Helicobacter_pylori_HPAG1 1
Helicobacter_pylori_51 1
Helicobacter_pylori_J99 1
Helicobacter_pylori_26695 1
Helicobacter_pylori_26695 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 2
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Rhodospirillum_rubrum_ATCC_11170 1
Brucella_ceti_TE28753-12 0
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Idiomarina_loihiensis_GSL_199 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 2
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alcanivorax_dieselolei_B5 1
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_denitrificans_ATCC_13867 2
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 2
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 2
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_resinovorans_NBRC_106553 1
Pseudomonas_mendocina_NK-01 1
Pseudomonas_aeruginosa_SCV20265 2
Pseudomonas_aeruginosa_MTB-1 2
Pseudomonas_aeruginosa_LES431 2
Pseudomonas_aeruginosa_RP73 2
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 2
Pseudomonas_aeruginosa_PA1 2
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 2
Pseudomonas_aeruginosa_M18 2
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 2
Pseudomonas_aeruginosa_PAO1 2
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 2
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 2

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Longest transcript per gene
Genome     Number
Erinaceus_europaeus_69   (Western European hedgehog)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 24
TargetDB__(Targets) 5
STRING_v9.0.5_(STRING) 128
Uniprot_2018_03_genome 55240
NCBI_2017_08_genome 10649

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