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Domain combinations for _gap_,55186,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55186 - ThrRS/AlaRS common domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pongo_abelii_76_2   (Sumatran orangutan)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Tupaia_belangeri_76   (Northern tree shrew)   0
Vicugna_pacos_76_1   (Alpaca)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   2
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Adineta_vaga 2
Helobdella_robusta_ 1
Linepithema_humile_v1.1   (Argentine ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Strigamia_maritima_22 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Caenorhabditis_japonica_ 1
Schistosoma_mansoni_ 0
Thelohanellus_kitauei 1
Proterospongia_sp._ATCC_50818_ 1
Capsaspora_owczarzaki_ATCC_30864_ 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Verticillium_albo-atrum_VaMs.102_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Selaginella_moellendorffii_ 1
Eucalyptus_grandis_v201   (Rose gum)   1
Malus_domestica_v196   (Apple)   2
Populus_trichocarpa_v156   (Black cottonwood)   0
Actinidia_chinensis_Hongyang_ 1
Triticum_urartu_22 0
Aegilops_tauschii_22 1
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   0
Pythium_iwayamai_DAOM_BR242034_22 1
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_GT1 0
Emiliania_huxleyi_CCMP1516_ 0
Coprothermobacter_proteolyticus_DSM_5265 1
Mesotoga_prima_MesG1.Ag.4.2 1
Kosmotoga_olearia_TBF_19.5.1 1
Ilyobacter_polytropus_DSM_2926 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1

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Strains
Genome     Number
Coccidioides_immitis_RMSCC_3703_ 1
Candidatus_Uzinura_diaspidicola_str._ASNER 0
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Tupaia_belangeri_69   (Northern tree shrew)   0
Vicugna_pacos_69_1   (Alpaca)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Oryzias_latipes_69_1   (Japanese medaka)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Malus_x_domestica_(Duplicate)   (Apple)   2
STRING_v9.0.5_(STRING) 11
NCBI_2017_08_genome 196
Uniprot_2018_03_genome 1240
TargetDB__(Targets) 2

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