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  Home > SCOP hierarchy > Domain combination - _gap_,55486,57552,_gap_

Domain combinations for _gap_,55486,57552,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   60
Pan_troglodytes_76_2.1.4   (Chimpanzee)   19
Gorilla_gorilla_76_3.1   (Western gorilla)   29
Pongo_abelii_76_2   (Sumatran orangutan)   19
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12
Papio_anubis_76   (Olive baboon)   24
Macaca_mulatta_76_1   (Rhesus monkey)   24
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   45
Otolemur_garnettii_76_3   (Small-eared galago)   19
Microcebus_murinus_76_1   (Gray mouse lemur)   14
Rattus_norvegicus_76_5.0   (Norway rat)   34
Mus_musculus_76_38   (House mouse)   59
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   24
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10
Cavia_porcellus_76_3   (Domestic guinea pig)   19
Oryctolagus_cuniculus_76_2   (Rabbit)   37
Ochotona_princeps_76   (American pika)   13
Tupaia_belangeri_76   (Northern tree shrew)   13
Sus_scrofa_76_10.2   (Pig)   23
Bos_taurus_76_3.1   (Cattle)   31
Ovis_aries_76_3.1   (Sheep)   31
Vicugna_pacos_76_1   (Alpaca)   7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31
Ailuropoda_melanoleuca_76_1   (Giant panda)   23
Canis_familiaris_76_3.1   (Dog)   30
Felis_catus_76_6.2   (Domestic cat)   24
Equus_caballus_76_2   (Horse)   24
Myotis_lucifugus_76_2.0   (Little brown bat)   33
Pteropus_vampyrus_76_1   (Large flying fox)   15
Sorex_araneus_76_1   (European shrew)   7
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   11
Loxodonta_africana_76_3   (African savanna elephant)   19
Echinops_telfairi_76   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   21
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Saccoglossus_kowalevskii_v3.0 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   14
Gallus_gallus_76_4   (Chicken)   16
Anas_platyrhynchos_76_1.0   (Mallard)   11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   13
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   14
Anolis_carolinensis_76_2.0   (Green anole)   15
Xenopus_laevis_   (African clawed frog)   30
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   19
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   16
Gadus_morhua_76_1   (Atlantic cod)   12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15
Takifugu_rubripes_76_4   (Torafugu)   49
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   15
Oryzias_latipes_76_1   (Japanese medaka)   16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13
Poecilia_formosa_76   (Amazon molly)   17
Oreochromis_niloticus_76_1.0   (Nile tilapia)   24
Astyanax_mexicanus_76   (Mexican tetra)   16
Danio_rerio_76_9   (Zebrafish)   21
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_76   (Vase tunicate)   4
Adineta_vaga 1
Octopus_bimaculoides_280 3
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 3
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 5
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 2
Drosophila_suzukii 5
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   16
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   5
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 4
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 6
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 5
Mnemiopsis_leidyi   (Sea walnut)   1
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 1
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 2
Mortierella_verticillata_NRRL_6337_ 3
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 1
Hebeloma_cylindrosporum_h7_v2.0 1
Agaricus_bisporus_var._bisporus_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 3
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 1
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 1
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Yarrowia_lipolytica_CLIB122 1
Catenaria_anguillulae_PL171_v1.0 4
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 1
Bigelowiella_natans_CCMP2755_22 2
Aureococcus_anophagefferens_ 1
Symbiodinium_minutum_clade_B1_v1.2 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   30
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   22
Pan_troglodytes_69_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_69_3.1   (Western gorilla)   22
Pongo_abelii_69_2   (Sumatran orangutan)   17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13
Macaca_mulatta_69_1   (Rhesus monkey)   17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   24
Otolemur_garnettii_69_3   (Small-eared galago)   18
Microcebus_murinus_69_1   (Gray mouse lemur)   14
Rattus_norvegicus_69_3.4   (Norway rat)   25
Mus_musculus_69_38   (House mouse)   35
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   23
Cavia_porcellus_69_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_69_2   (Rabbit)   32
Ochotona_princeps_69   (American pika)   13
Tupaia_belangeri_69   (Northern tree shrew)   13
Sus_scrofa_69_10.2   (Pig)   22
Bos_taurus_69_3.1   (Cattle)   30
Vicugna_pacos_69_1   (Alpaca)   7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   30
Ailuropoda_melanoleuca_69_1   (Giant panda)   23
Canis_familiaris_69_3.1   (Dog)   26
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   19
Myotis_lucifugus_69_2.0   (Little brown bat)   33
Pteropus_vampyrus_69_1   (Large flying fox)   15
Sorex_araneus_69_1   (European shrew)   7
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   11
Loxodonta_africana_69_3   (African savanna elephant)   18
Echinops_telfairi_69   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   19
Ornithorhynchus_anatinus_69_5   (Platypus)   5
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   11
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11
Anolis_carolinensis_69_2.0   (Green anole)   11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   14
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   12
Takifugu_rubripes_69_4   (Torafugu)   15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13
Oryzias_latipes_69_1   (Japanese medaka)   14
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15
Danio_rerio_69_9   (Zebrafish)   18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   55
Homo_sapiens__(NCBI_version)   (Human)   36
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   35
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Encephalitozoon_intestinalis__(endoparasite) 1
TargetDB__(Targets) 14
STRING_v9.0.5_(STRING) 534
Uniprot_2018_03_genome 45387
NCBI_2017_08_genome 9085

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.