SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,55550,50044,50044 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55550 - SH2 domain
50044 - SH3-domain
50044 - SH3-domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Canis_familiaris_76_3.1   (Dog)   1
Pristionchus_pacificus_ 0
Meloidogyne_hapla_ 1
Mnemiopsis_leidyi   (Sea walnut)   1
Monosiga_brevicollis_ 1

Longest transcript per gene
Genome     Number
Canis_familiaris_69_3.1   (Dog)   1

Others
Genome     Number
Uniprot_2018_03_genome 90
STRING_v9.0.5_(STRING) 1
Protein_Data_Bank_(all_PDB_sequenc) 2
NCBI_2017_08_genome 11

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