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Domain combinations for _gap_,55550,_gap_,57889,48350 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55550 - SH2 domain
57889 - Cysteine-rich domain
48350 - GTPase activation domain, GAP

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Poecilia_formosa_76   (Amazon molly)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 1
Crassostrea_gigas_22   (Pacific oyster)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Anopheles_darlingi_22   (American malaria mosquito)   0
Sarcoptes_scabiei 1
Amphimedon_queenslandica 2

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
STRING_v9.0.5_(STRING) 9
Uniprot_2018_03_genome 854
NCBI_2017_08_genome 126

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