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  Home > SCOP hierarchy > Domain combination - _gap_,55781,109604

Domain combinations for _gap_,55781,109604 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55781 - GAF domain-like
109604 - HD-domain/PDEase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Macaca_mulatta_76_1   (Rhesus monkey)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Tupaia_belangeri_76   (Northern tree shrew)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Meleagris_gallopavo_76_2   (Turkey)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_persimilis_1.3 0
Drosophila_ananassae_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Sarcoptes_scabiei 0
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Taenia_solium_   (Pork tapeworm)   1
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Proterospongia_sp._ATCC_50818_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Ectocarpus_siliculosus 0
Phytophthora_capsici_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Synechococcus_sp._PCC_6312 0
Anaerolinea_thermophila_UNI-1 0
Sphaerobacter_thermophilus_DSM_20745 0
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Deinococcus_proteolyticus_MRP 1
Deinococcus_radiodurans_R1 1
Meiothermus_silvanus_DSM_9946 1
Thermus_sp._CCB_US3_UF1 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 1
Ethanoligenens_harbinense_YUAN-3 1
Candidatus_Desulforudis_audaxviator_MP104C 2
Pelotomaculum_thermopropionicum_SI 1
Desulfotomaculum_kuznetsovii_DSM_6115 1
Clostridium_sticklandii_DSM_519 1
Heliobacterium_modesticaldum_Ice1 1
Alkaliphilus_oremlandii_OhILAs 1
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_sp._BNL1100 1
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1
Caldicellulosiruptor_bescii_DSM_6725 1
Carboxydothermus_hydrogenoformans_Z-2901 1
Ammonifex_degensii_KC4 1
Halothermothrix_orenii_H_168 1
Chloroherpeton_thalassium_ATCC_35110 1
Pirellula_staleyi_DSM_6068 1
Thermovirga_lienii_DSM_17291 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1
Turneriella_parva_DSM_21527 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 1
Spirochaeta_africana_DSM_8902 1
Marinitoga_piezophila_KA3 2
Kosmotoga_olearia_TBF_19.5.1 1
Fervidobacterium_pennivorans_DSM_9078 1
Fervidobacterium_nodosum_Rt17-B1 1
Thermosipho_melanesiensis_BI429 2
Thermosipho_africanus_TCF52B 2
Thermotoga_sp._RQ2 1
Thermotoga_naphthophila_RKU-10 1
Thermotoga_petrophila_RKU-1 1
Thermotoga_neapolitana_DSM_4359 1
Thermotoga_maritima_MSB8 1
Dictyoglomus_turgidum_DSM_6724 1
Dictyoglomus_thermophilum_H-6-12 1
Candidatus_Koribacter_versatilis_Ellin345 0
Syntrophobacter_fumaroxidans_MPOB 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfohalobium_retbaense_DSM_5692 1
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_salexigens_DSM_2638 2
Hippea_maritima_DSM_10411 0
Geobacter_daltonii_FRC-32 0
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 1
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 1
Pelobacter_carbinolicus_DSM_2380 0
Haliangium_ochraceum_DSM_14365 0
Azoarcus_sp._BH72 0
Dechlorosoma_suillum_PS 0
Laribacter_hongkongensis_HLHK9 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Cupriavidus_metallidurans_CH34 0
Cupriavidus_necator_N-1 0
Burkholderia_glumae_BGR1 0
Acidovorax_sp._KKS102 0
Herbaspirillum_seropedicae_SmR1 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Sideroxydans_lithotrophicus_ES-1 2
Magnetococcus_marinus_MC-1 0
Rhodospirillum_photometricum_DSM_122 1
Magnetospirillum_magneticum_AMB-1 0
Starkeya_novella_DSM_506 0
Tolumonas_auensis_DSM_9187 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_fischeri_MJ11 0
Vibrio_anguillarum_775 0
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 0
Vibrio_cholerae_O395 0
Psychromonas_ingrahamii_37 0
Shewanella_baltica_OS185 0
Shewanella_sp._MR-4 0
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Marinobacter_adhaerens_HP15 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Marinomonas_mediterranea_MMB-1 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 0
Edwardsiella_tarda_EIB202 0
Yersinia_pseudotuberculosis_IP_31758 0
Yersinia_pestis_Pestoides_F 0
Yersinia_enterocolitica_subsp._enterocolitica_8081 0
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_fulva_12-X 0
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_mendocina_ymp 0
Pseudomonas_sp._VLB120 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Batrachochytrium_dendrobatidis_JEL423_ 0
Chamaesiphon_minutus_PCC_6605 0
Clostridium_thermocellum_DSM_1313 1
Clostridium_acidurici_9a 1
Clostridium_pasteurianum_BC1 1
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Thermotoga_maritima_MSB8 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfobacula_toluolica_Tol2 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_desulfuricans_ND132 1
Geobacter_sp._M18 2
Geobacter_sulfurreducens_PCA 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 2
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Aeromonas_hydrophila_ML09-119 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_nigripulchritudo_VibrioScope 0
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Yersinia_pseudotuberculosis_PB1/+ 0
Yersinia_pseudotuberculosis_YPIII 0
Yersinia_pseudotuberculosis_IP_32953 0
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 0
Yersinia_enterocolitica_subsp._palearctica_Y11 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_resinovorans_NBRC_106553 0
Pseudomonas_mendocina_NK-01 0

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Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Tupaia_belangeri_69   (Northern tree shrew)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   1
Loa_loa_v3.3_(Request)   (Eye worm)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 49
Uniprot_2018_03_genome 4818
NCBI_2017_08_genome 566

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.