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Domain combinations for _gap_,55781,47384,55874,52172 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55781 - GAF domain-like
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 0
Postia_placenta_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_dahliae_VdLs.17_ 0
Fusarium_verticillioides_7600_ 1
Trichoderma_virens_Gv29-8_ 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_sydowii_v1.0 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_wentii_v1.0 0
Penicillium_marneffei_ATCC_18224_ 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 7
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2
Arabidopsis_thaliana_10   (Thale cress)   3
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   6
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   6
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   9
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 7
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 3
Oryza_nivara_22 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3
Oryza_sativa_v193   (Rice)   3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   3
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 2
Physcomitrella_patens 7
Thecamonas_trahens_ATCC_50062_ 0
Leptolyngbya_sp._PCC_7376 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_6312 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 0
cyanobacterium_UCYN-A 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 1
Calothrix_sp._PCC_7507 0
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7524 0
Modestobacter_marinus 0
Blastococcus_saxobsidens_DD2 0
Geodermatophilus_obscurus_DSM_43160 0
Thermomonospora_curvata_DSM_43183 0
Kitasatospora_setae_KM-6054 0
Actinosynnema_mirum_DSM_43827 0
Pseudonocardia_dioxanivorans_CB1190 0
Amycolatopsis_mediterranei_U32 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_chubuense_NBB4 0
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Candidatus_Desulforudis_audaxviator_MP104C 1
Pelotomaculum_thermopropionicum_SI 0
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 0
Heliobacterium_modesticaldum_Ice1 0
Paenibacillus_sp._JDR-2 1
Paenibacillus_mucilaginosus_3016 0
Solibacillus_silvestris_StLB046 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Belliella_baltica_DSM_15883 0
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 0
Robiginitalea_biformata_HTCC2501 0
Opitutus_terrae_PB90-1 1
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 0
Spirochaeta_africana_DSM_8902 1
Deferribacter_desulfuricans_SSM1 0
Candidatus_Koribacter_versatilis_Ellin345 0
Candidatus_Nitrospira_defluvii 1
Leptospirillum_ferrooxidans_C2-3 0
Wolinella_succinogenes_DSM_1740 0
Desulfobacca_acetoxidans_DSM_11109 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfatibacillum_alkenivorans_AK-01 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 0
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 3
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Burkholderia_phytofirmans_PsJN 0
Burkholderia_phymatum_STM815 0
Burkholderia_xenovorans_LB400 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 0
Burkholderia_sp._RPE64 0
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 0
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Polaromonas_sp._JS666 0
Achromobacter_xylosoxidans 0
Magnetococcus_marinus_MC-1 0
Caulobacter_crescentus_NA1000 1
Granulibacter_bethesdensis_CGDNIH1 0
Methylobacterium_populi_BJ001 0
Methylobacterium_radiotolerans_JCM_2831 1
Bradyrhizobium_sp._ORS_278 0
Hahella_chejuensis_KCTC_2396 0
Marinomonas_mediterranea_MMB-1 0
Thiocystis_violascens_DSM_198 0
Pseudomonas_sp._TKP 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Frankia_sp._EuI1c 0
Streptomyces_fulvissimus_DSM_40593 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Actinoplanes_friuliensis_DSM_7358 0
Mycobacterium_kansasii_ATCC_12478 0
Desulfosporosinus_meridiei_DSM_13257 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_botulinum_BKT015925 1
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 2
Burkholderia_sp._YI23 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Caulobacter_crescentus_CB15 1
Rhodopseudomonas_palustris_TIE-1 0
Rhodopseudomonas_palustris_HaA2 0
Rhodopseudomonas_palustris_BisB5 0
Rhodopseudomonas_palustris_CGA009 0
Bradyrhizobium_sp._BTAi1 0
Pseudomonas_putida_H8234 1
Pseudomonas_putida_GB-1 1
Pseudomonas_fluorescens_A506 1

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   2

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   6
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 70
Uniprot_2018_03_genome 19425
NCBI_2017_08_genome 1848
TargetDB__(Targets) 1

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