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Domain combinations for _gap_,55781,55785,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55781 - GAF domain-like
55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mortierella_verticillata_NRRL_6337_ 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 1
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7524 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Anaerolinea_thermophila_UNI-1 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 0
Thermus_sp._CCB_US3_UF1 0
Thermus_thermophilus_HB27 0
Symbiobacterium_thermophilum_IAM_14863 1
Candidatus_Desulforudis_audaxviator_MP104C 2
Pelotomaculum_thermopropionicum_SI 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_ruminis_DSM_2154 1
Clostridium_sticklandii_DSM_519 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_italicus_Ab9 1
Exiguobacterium_sibiricum_255-15 1
Bacillus_pseudofirmus_OF4 0
Chlorobium_luteolum_DSM_273 0
Candidatus_Amoebophilus_asiaticus_5a2 0
Odoribacter_splanchnicus_DSM_20712 1
Sphingobacterium_sp._21 1
Sphaerochaeta_pleomorpha_str._Grapes 0
Sphaerochaeta_globus_str._Buddy 0
Marinitoga_piezophila_KA3 0
Petrotoga_mobilis_SJ95 0
Fervidobacterium_pennivorans_DSM_9078 1
Fervidobacterium_nodosum_Rt17-B1 1
Thermosipho_melanesiensis_BI429 1
Thermosipho_africanus_TCF52B 1
Thermotoga_lettingae_TMO 0
Thermotoga_sp._RQ2 1
Thermotoga_naphthophila_RKU-10 1
Thermotoga_petrophila_RKU-1 1
Thermotoga_neapolitana_DSM_4359 1
Thermotoga_maritima_MSB8 1
Sulfurihydrogenibium_sp._YO3AOP1 1
Sulfurihydrogenibium_azorense_Az-Fu1 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 0
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_saanensis_SP1PR4 0
Terriglobus_roseus_DSM_18391 0
Acidobacterium_capsulatum_ATCC_51196 0
Candidatus_Nitrospira_defluvii 1
Leptospirillum_ferrooxidans_C2-3 1
Desulfobacca_acetoxidans_DSM_11109 1
Syntrophus_aciditrophicus_SB 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfohalobium_retbaense_DSM_5692 2
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_daltonii_FRC-32 0
Geobacter_sp._M21 2
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 1
Geobacter_sulfurreducens_KN400 0
Pelobacter_propionicus_DSM_2379 0
Sorangium_cellulosum_'So_ce_56' 1
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 2
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 2
Thauera_sp._MZ1T 0
Burkholderia_phytofirmans_PsJN 0
Cupriavidus_necator_N-1 0
Burkholderia_sp._RPE64 0
Burkholderia_sp._CCGE1002 0
Bordetella_petrii_DSM_12804 0
Methylotenera_versatilis_301 0
Methylobacillus_flagellatus_KT 0
Hirschia_baltica_ATCC_49814 0
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_rubrum_F11 0
Azospirillum_brasilense_Sp245 1
Gluconobacter_oxydans_621H 0
Azorhizobium_caulinodans_ORS_571 0
Methylobacterium_sp._4-46 1
Mesorhizobium_opportunistum_WSM2075 0
Vibrio_anguillarum_775 0
Vibrio_vulnificus_MO6-24/O 0
Vibrio_cholerae_O395 0
Serratia_sp._AS12 0
Serratia_plymuthica_AS9 0
Pantoea_sp._At-9b 0
Pantoea_vagans_C9-1 0
Enterobacter_sp._R4-368 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Salinarchaeum_sp._Harcht-Bsk1 1
Natrinema_sp._J7-2 1
Halorubrum_lacusprofundi_ATCC_49239 1
Halobacterium_salinarum_R1 1
Halobacterium_sp._NRC-1 1

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Strains
Genome     Number
Schizosaccharomyces_pombe_972h-_ 0
Chamaesiphon_minutus_PCC_6605 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7425 1
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Chthonomonas_calidirosea_T49 1
Thermus_oshimai_JL-2 0
Thermus_thermophilus_JL-18 0
Thermus_thermophilus_SG0.5JP17-16 0
Thermus_thermophilus_HB8 0
Clostridium_botulinum_E3_str._Alaska_E43 1
Thermotoga_maritima_MSB8 1
Leptospirillum_ferriphilum_ML-04 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfobacula_toluolica_Tol2 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Sorangium_cellulosum_So0157-2 2
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 2
Burkholderia_ambifaria_MC40-6 0
Rhodospirillum_rubrum_ATCC_11170 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Rhodopseudomonas_palustris_BisB18 0
Bradyrhizobium_japonicum_USDA_6 1
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_nigripulchritudo_VibrioScope 0
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Serratia_sp._AS13 0
Serratia_plymuthica_S13 0
Serratia_plymuthica_4Rx13 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_resinovorans_NBRC_106553 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 36
Uniprot_2018_03_genome 8880
NCBI_2017_08_genome 521

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