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Domain combinations for _gap_,55785,52540,46689 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
52540 - P-loop containing nucleoside triphosphate hydrolases
46689 - Homeodomain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Eggerthella_sp._YY7918 1
Chloroflexus_sp._MS-G 1
Chloroflexus_aggregans_DSM_9485 1
Acidaminococcus_intestini_RyC-MR95 2
Natranaerobius_thermophilus_JW/NM-WN-LF 3
Oscillibacter_valericigenes_Sjm18-20 1
Thermincola_potens_JR 1
Pelotomaculum_thermopropionicum_SI 3
Desulfosporosinus_acidiphilus_SJ4 6
Desulfosporosinus_orientis_DSM_765 8
Desulfitobacterium_hafniense_Y51 9
Desulfitobacterium_dehalogenans_ATCC_51507 3
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_kuznetsovii_DSM_6115 3
Desulfotomaculum_ruminis_DSM_2154 2
Acetobacterium_woodii_DSM_1030 1
Eubacterium_limosum_KIST612 1
Clostridium_difficile_630 2
Clostridium_sticklandii_DSM_519 1
Syntrophothermus_lipocalidus_DSM_12680 2
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Alkaliphilus_oremlandii_OhILAs 1
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 10
Clostridium_kluyveri_DSM_555 2
Clostridium_beijerinckii_NCIMB_8052 2
Clostridium_tetani_E88 1
Clostridium_botulinum_A_str._ATCC_3502 1
Thermosediminibacter_oceani_DSM_16646 1
Tepidanaerobacter_acetatoxydans_Re1 2
Carboxydothermus_hydrogenoformans_Z-2901 2
Thermoanaerobacter_sp._X514 2
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Acetohalobium_arabaticum_DSM_5501 2
Halanaerobium_praevalens_DSM_2228 1
Kyrpidia_tusciae_DSM_2912 4
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Brevibacillus_brevis_NBRC_100599 3
Paenibacillus_mucilaginosus_3016 1
Solibacillus_silvestris_StLB046 1
Lysinibacillus_sphaericus_C3-41 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_clausii_KSM-K16 2
Bacillus_megaterium_DSM_319 1
Haliscomenobacter_hydrossis_DSM_1100 0
Caldisericum_exile_AZM16c01 1
Syntrophus_aciditrophicus_SB 2
Desulfomonile_tiedjei_DSM_6799 4
Syntrophobacter_fumaroxidans_MPOB 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfotalea_psychrophila_LSv54 3
Desulfatibacillum_alkenivorans_AK-01 1
Desulfobacterium_autotrophicum_HRM2 4
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Geobacter_daltonii_FRC-32 2
Geobacter_metallireducens_GS-15 3
Anaeromyxobacter_sp._Fw109-5 1
Azoarcus_sp._KH32C 1
Burkholderia_phytofirmans_PsJN 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_necator_N-1 1
Burkholderia_sp._RPE64 1
Verminephrobacter_eiseniae_EF01-2 1
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Acidovorax_ebreus_TPSY 1
Herminiimonas_arsenicoxydans 1
Janthinobacterium_sp._Marseille 1
Bordetella_petrii_DSM_12804 2
Achromobacter_xylosoxidans_A8 1
Achromobacter_xylosoxidans 2
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Mesorhizobium_sp._BNC1 1
Pelagibacterium_halotolerans_B2 1
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_sp._Ex25 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_furnissii_NCTC_11218 1
Photobacterium_profundum_SS9 1
Psychromonas_sp._CNPT3 1
Shewanella_violacea_DSS12 1
Colwellia_psychrerythraea_34H 1
Marinobacter_adhaerens_HP15 0
Halomonas_elongata_DSM_2581 1
Photorhabdus_asymbiotica 0
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Proteus_mirabilis_HI4320 1
Rahnella_sp._Y9602 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 2
Serratia_sp._AS12 1
Serratia_sp._ATCC_39006 1
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 2
Dickeya_dadantii_Ech703 1
Pantoea_sp._At-9b 1
Pantoea_ananatis_LMG_20103 1
Escherichia_blattae_DSM_4481 2
Cronobacter_turicensis_z3032 1
Cronobacter_sakazakii_ES15 1
Shigella_sonnei_Ss046 1
Shigella_flexneri_5_str._8401 1
Shigella_boydii_CDC_3083-94 1
Klebsiella_oxytoca_E718 2
Enterobacter_aerogenes_KCTC_2190 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2
Enterobacter_asburiae_LF7a 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1
Citrobacter_rodentium_ICC168 2
Citrobacter_koseri_ATCC_BAA-895 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 2
Pseudomonas_syringae_pv._tomato_str._DC3000 2
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 2
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Acinetobacter_sp._ADP1 1

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Strains
Genome     Number
Desulfosporosinus_meridiei_DSM_13257 2
Desulfitobacterium_hafniense_DCB-2 11
Desulfotomaculum_gibsoniae_DSM_7213 4
Clostridium_difficile_BI1 2
Clostridium_difficile_R20291 2
Clostridium_difficile_CD196 2
Coprococcus_catus_GD/7 1
Clostridium_sp._SY8519 1
Clostridium_saccharobutylicum_DSM_13864 2
Clostridium_autoethanogenum_DSM_10061 9
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 3
Clostridium_kluyveri_NBRC_12016 2
Clostridium_tetani_genome_12124569 1
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_F_str._Langeland 2
Clostridium_botulinum_E3_str._Alaska_E43 3
Clostridium_botulinum_B1_str._Okra 2
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Thermacetogenium_phaeum_DSM_12270 5
Thermoanaerobacter_sp._X513 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Geobacter_sp._M18 1
Burkholderia_sp._YI23 1
Burkholderia_cepacia_GG4 2
Alicycliphilus_denitrificans_BC 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Proteus_mirabilis_BB2000 1
Morganella_morganii_subsp._morganii_KT 1
Rahnella_aquatilis_HX2 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2
Yersinia_enterocolitica_subsp._palearctica_Y11 2
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 2
Dickeya_dadantii_Ech586 1
Pantoea_ananatis_LMG_5342 1
Pantoea_ananatis_PA13 1
Pantoea_ananatis_AJ13355 1
Raoultella_ornithinolytica_B6 2
Shigella_sonnei_53G 1
Shigella_flexneri_2002017 1
Shigella_flexneri_2a_str._2457T 1
Shigella_flexneri_2a_str._301 1
Shigella_boydii_Sb227 1
Klebsiella_oxytoca_KCTC_1686 2
Klebsiella_pneumoniae_342 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1
Enterobacter_aerogenes_EA1509E 2
Escherichia_coli_E24377A 2
Escherichia_coli_E._coli_PMV-1 3
Escherichia_coli_JJ1886 2
Escherichia_coli_LY180 2
Escherichia_coli_APEC_O78 2
Escherichia_coli_O7:K1_str._CE10 2
Escherichia_coli_O104:H4_str._2009EL-2050 2
Escherichia_coli_O104:H4_str._2009EL-2071 2
Escherichia_coli_O104:H4_str._2011C-3493 2
Escherichia_coli_NA114 1
Escherichia_coli_P12b 2
Escherichia_coli_str._'clone_D_i2' 2
Escherichia_coli_str._'clone_D_i14' 2
Escherichia_coli_UM146 3
Escherichia_coli_042 2
Escherichia_coli_Xuzhou21 1
Escherichia_coli_IHE3034 3
Escherichia_coli_UMNK88 2
Escherichia_coli_O83:H1_str._NRG_857C 3
Escherichia_coli_ABU_83972 2
Escherichia_coli_KO11FL 2
Escherichia_coli_KO11FL 2
Escherichia_coli_LF82 3
Escherichia_coli_ED1a 2
Escherichia_coli_IAI39 2
Escherichia_coli_UMN026 2
Escherichia_coli_55989 2
Escherichia_coli_S88 2
Escherichia_coli_IAI1 2
Escherichia_coli_W 2
Escherichia_coli_W 2
Escherichia_coli_DH1 2
Escherichia_coli_DH1 2
Escherichia_coli_ATCC_8739 2
Escherichia_coli_BL21(DE3) 2
Escherichia_coli_BL21(DE3) 2
Escherichia_coli_SMS-3-5 3
Escherichia_coli_SE15 2
Escherichia_coli_SE11 2
Escherichia_coli_APEC_O1 3
Escherichia_coli_O103:H2_str._12009 2
Escherichia_coli_UTI89 3
Escherichia_coli_536 2
Escherichia_coli_HS 2
Escherichia_coli_ETEC_H10407 2
Escherichia_coli_O55:H7_str._RM12579 2
Escherichia_coli_O55:H7_str._CB9615 2
Escherichia_coli_O26:H11_str._11368 2
Escherichia_coli_CFT073 2
Escherichia_coli_O111:H-_str._11128 2
Escherichia_coli_O127:H6_str._E2348/69 2
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Escherichia_coli_str._K-12_substr._MDS42 2
Escherichia_coli_BW2952 2
Escherichia_coli_str._K-12_substr._MG1655 2
Escherichia_coli_str._K-12_substr._W3110 2
Escherichia_coli_str._K-12_substr._DH10B 2
Escherichia_coli_B_str._REL606 2
Enterobacter_cloacae_SCF1 3
Enterobacter_cloacae_EcWSU1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_syringae_pv._phaseolicola_1448A 2
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 2
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 2
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_resinovorans_NBRC_106553 2
Pseudomonas_mendocina_NK-01 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Acinetobacter_johnsonii__SH046 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 8
Uniprot_2018_03_genome 44440
NCBI_2017_08_genome 28564
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 237

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