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Domain combinations for _gap_,55785,55785,47384,55874,52172 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mixia_osmundae_IAM_14324_v1.0 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Didymella_exigua_CBS_183.55_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Phytophthora_capsici_ 0
Phaeodactylum_tricornutumCCAP_1055/1 1
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._PCC_7502 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 0
Gloeocapsa_sp._PCC_7428 2
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 0
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 1
Frankia_alni_ACN14a 1
Actinoplanes_missouriensis_431 0
Roseiflexus_sp._RS-1 2
Roseiflexus_castenholzii_DSM_13941 2
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Desulfosporosinus_acidiphilus_SJ4 0
Desulfotomaculum_acetoxidans_DSM_771 0
Clostridium_beijerinckii_NCIMB_8052 1
Ignavibacterium_album_JCM_16511 1
Pelodictyon_phaeoclathratiforme_BU-1 1
Haliscomenobacter_hydrossis_DSM_1100 0
Chitinophaga_pinensis_DSM_2588 0
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Runella_slithyformis_DSM_19594 0
Bacteroides_vulgatus_ATCC_8482 1
Owenweeksia_hongkongensis_DSM_17368 0
Flavobacteriaceae_bacterium_3519-10 0
Isosphaera_pallida_ATCC_43644 0
Rhodopirellula_baltica_SH_1 1
Opitutus_terrae_PB90-1 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 1
Treponema_primitia_ZAS-2 0
Spirochaeta_thermophila_DSM_6192 0
Thermodesulfatator_indicus_DSM_15286 0
Desulfurispirillum_indicum_S5 0
Denitrovibrio_acetiphilus_DSM_12809 0
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Acidithiobacillus_ferrivorans_SS3 1
Bdellovibrio_bacteriovorus_HD100 1
Desulfarculus_baarsii_DSM_2075 1
Desulfobacca_acetoxidans_DSM_11109 1
Desulfomonile_tiedjei_DSM_6799 2
Syntrophobacter_fumaroxidans_MPOB 3
Desulfotalea_psychrophila_LSv54 4
Desulfobulbus_propionicus_DSM_2032 6
Desulfatibacillum_alkenivorans_AK-01 10
Desulfobacterium_autotrophicum_HRM2 6
Desulfococcus_oleovorans_Hxd3 1
Desulfohalobium_retbaense_DSM_5692 1
Desulfomicrobium_baculatum_DSM_4028 5
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_magneticus_RS-1 6
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 2
Desulfovibrio_africanus_str._Walvis_Bay 5
Geobacter_sp._M21 6
Geobacter_lovleyi_SZ 1
Geobacter_bemidjiensis_Bem 5
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 4
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 4
Anaeromyxobacter_sp._Fw109-5 2
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 2
Myxococcus_xanthus_DK_1622 1
Dechloromonas_aromatica_RCB 7
Azoarcus_sp._KH32C 4
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 1
Dechlorosoma_suillum_PS 0
Chromobacterium_violaceum_ATCC_12472 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Rubrivivax_gelatinosus_IL144 0
Leptothrix_cholodnii_SP-6 1
Burkholderia_rhizoxinica_HKI_454 0
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 0
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Burkholderia_sp._RPE64 1
Burkholderia_sp._CCGE1002 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_ambifaria_AMMD 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Alicycliphilus_denitrificans_K601 1
Ramlibacter_tataouinensis_TTB310 2
Delftia_sp._Cs1-4 1
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 0
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 3
Comamonas_testosteroni_CNB-2 1
Collimonas_fungivorans_Ter331 1
Nitrosospira_multiformis_ATCC_25196 2
Nitrosomonas_sp._Is79A3 1
Gallionella_capsiferriformans_ES-2 0
Magnetococcus_marinus_MC-1 3
Caulobacter_sp._K31 2
Caulobacter_crescentus_NA1000 1
Novosphingobium_sp._PP1Y 1
Rhodospirillum_photometricum_DSM_122 1
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 1
Rhodospirillum_rubrum_F11 2
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 2
Azospirillum_brasilense_Sp245 5
Micavibrio_aeruginosavorus_ARL-13 1
Xanthobacter_autotrophicus_Py2 1
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_extorquens_AM1 0
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 0
Candidatus_Liberibacter_asiaticus_str._psy62 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Rhodomicrobium_vannielii_ATCC_17100 2
Hyphomicrobium_sp._MC1 1
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 1
Bradyrhizobium_sp._ORS_278 2
Bartonella_grahamii_as4aup 1
Bartonella_quintana_str._Toulouse 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Psychromonas_ingrahamii_37 1
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 0
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_denitrificans_OS217 0
Shewanella_pealeana_ATCC_700345 0
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_sp._MR-4 0
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_sp._4H-3-7+YE-5 0
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Hahella_chejuensis_KCTC_2396 0
Marinomonas_sp._MWYL1 0
Stenotrophomonas_maltophilia_K279a 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Allochromatium_vinosum_DSM_180 3
Thiocystis_violascens_DSM_198 1
Nitrosococcus_halophilus_Nc4 0
Coxiella_burnetii_Dugway_5J108-111 1
Pseudomonas_stutzeri_A1501 0
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_mendocina_ymp 0
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Methanosaeta_concilii_GP6 2

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Strains
Genome     Number
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Aspergillus_fumigatus_A1163_ 1
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._PCC_7002 1
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 0
Actinoplanes_friuliensis_DSM_7358 1
Dehalococcoides_mccartyi_BTF08 1
Dehalococcoides_sp._GT 1
Dehalococcoides_sp._VS 1
Dehalococcoides_sp._CBDB1 1
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 0
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 0
Singulisphaera_acidiphila_DSM_18658 2
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 0
Spirochaeta_thermophila_DSM_6578 0
Desulfocapsa_sulfexigens_DSM_10523 5
Desulfobacula_toluolica_Tol2 6
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 6
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 0
Burkholderia_sp._YI23 0
Burkholderia_sp._CCGE1003 0
Burkholderia_sp._CCGE1001 0
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 0
Burkholderia_multivorans_ATCC_17616 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Alicycliphilus_denitrificans_BC 1
Caulobacter_crescentus_CB15 2
Magnetospirillum_gryphiswaldense_MSR-1_v2 2
Rhodospirillum_rubrum_ATCC_11170 2
Micavibrio_aeruginosavorus_EPB 1
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 1
Hyphomicrobium_nitrativorans_NL23 0
Hyphomicrobium_denitrificans_1NES1 1
Rhodopseudomonas_palustris_HaA2 0
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 0
Bradyrhizobium_sp._S23321 2
Bradyrhizobium_sp._BTAi1 2
Bradyrhizobium_oligotrophicum_S58 2
Bradyrhizobium_japonicum_USDA_6 2
Bartonella_australis_Aust/NH1 1
Bartonella_quintana_RM-11 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Aeromonas_hydrophila_ML09-119 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Thalassolituus_oleivorans_MIL-1 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._raphani_756C 1
Thioalkalivibrio_nitratireducens_DSM_14787 0
Coxiella_burnetii_CbuK_Q154 1
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_493 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_DSM_10701 0
Pseudomonas_stutzeri_DSM_4166 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_R124 1
Pseudomonas_resinovorans_NBRC_106553 0
Pseudomonas_mendocina_NK-01 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 1
Methylophaga_sp._JAM7 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 5
TargetDB__(Targets) 5
STRING_v9.0.5_(STRING) 186
Uniprot_2018_03_genome 51020
NCBI_2017_08_genome 6529

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