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Domain combinations for _gap_,55785,55785,55781 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
55781 - GAF domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Synechocystis_sp._PCC_6803 0
Thermosynechococcus_elongatus_BP-1 0
Synechococcus_elongatus_PCC_7942 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 0
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 0
Thermobispora_bispora_DSM_43833 0
Acidothermus_cellulolyticus_11B 0
Geodermatophilus_obscurus_DSM_43160 0
Catenulispora_acidiphila_DSM_44928 0
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
[Cellvibrio]_gilvus_ATCC_13127 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Dehalococcoides_sp._BAV1 0
Anaerolinea_thermophila_UNI-1 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 0
Oceanithermus_profundus_DSM_14977 0
Desulfotomaculum_reducens_MI-1 0
Desulfotomaculum_acetoxidans_DSM_771 0
Halanaerobium_hydrogeniformans 0
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 0
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobaculum_parvum_NCIB_8327 0
Belliella_baltica_DSM_15883 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 0
Bacteroides_sp._CF50 0
Gramella_forsetii_KT0803 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 0
Opitutus_terrae_PB90-1 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Marinitoga_piezophila_KA3 0
Mesotoga_prima_MesG1.Ag.4.2 0
Fervidobacterium_pennivorans_DSM_9078 0
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 0
Acidobacterium_capsulatum_ATCC_51196 0
Candidatus_Methylomirabilis_oxyfera 0
Desulfarculus_baarsii_DSM_2075 0
Desulfobacca_acetoxidans_DSM_11109 0
Desulfotalea_psychrophila_LSv54 0
Desulfomicrobium_baculatum_DSM_4028 0
Desulfovibrio_magneticus_RS-1 0
Geobacter_sp._M21 0
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 0
Pelobacter_propionicus_DSM_2379 0
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 0
Pseudogulbenkiania_sp._NH8B 0
Chromobacterium_violaceum_ATCC_12472 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Delftia_acidovorans_SPH-1 0
Polaromonas_sp._JS666 0
Polaromonas_naphthalenivorans_CJ2 0
Rhodoferax_ferrireducens_T118 0
Comamonas_testosteroni_CNB-2 0
Nitrosospira_multiformis_ATCC_25196 0
Sideroxydans_lithotrophicus_ES-1 0
Gallionella_capsiferriformans_ES-2 0
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_sp._4-46 0
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 0
Mesorhizobium_opportunistum_WSM2075 0
Bradyrhizobium_japonicum_USDA_110 0
Shewanella_woodyi_ATCC_51908 0
Methylomicrobium_alcaliphilum 0
Methylococcus_capsulatus_str._Bath 0
Xanthomonas_albilineans_GPE_PC73 0
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
gamma_proteobacterium_HdN1 0
Pseudomonas_sp._TKP 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_stutzeri_A1501 0
Methylophaga_sp._JAM1 0
Thiomicrospira_crunogena_XCL-2 0
Methanocella_paludicola_SANAE 0
Methanosaeta_concilii_GP6 0
Methanosalsum_zhilinae_DSM_4017 0
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 0
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 0
Methanospirillum_hungatei_JF-1 0
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 0
Archaeoglobus_fulgidus_DSM_4304 0
Haloterrigena_turkmenica_DSM_5511 0
Natrialba_magadii_ATCC_43099 0
Halorubrum_lacusprofundi_ATCC_49239 0
Halogeometricum_borinquense_DSM_11551 0
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 0

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 0
Synechococcus_elongatus_PCC_6301 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 0
Cyanothece_sp._PCC_8801 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Frankia_sp._EuI1c 0
Frankia_sp._CcI3 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_collinus_Tu_365 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Dehalococcoides_mccartyi_GY50 0
Dehalococcoides_mccartyi_DCMB5 0
Dehalococcoides_mccartyi_BTF08 0
Dehalococcoides_sp._GT 0
Dehalococcoides_sp._VS 0
Dehalococcoides_sp._CBDB1 0
Echinicola_vietnamensis_DSM_17526 0
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Geobacter_sulfurreducens_PCA 0
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 0
Myxococcus_stipitatus_DSM_14675 0
Methylobacterium_extorquens_PA1 0
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_DSM_4166 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 0
Pseudomonas_fluorescens_F113 0
Methylophaga_sp._JAM7 0
Methanomethylovorans_hollandica_DSM_15978 0
Methanolobus_psychrophilus_R15 0
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0
Natronococcus_occultus_SP4 0
Haloarcula_hispanica_N601 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 945
NCBI_2017_08_genome 204

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