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Domain combinations for _gap_,55785,55785,55785,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Setosphaeria_turcica_v1.0 0
Selaginella_moellendorffii_ 0
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 0
Microcoleus_sp._PCC_7113 3
Geitlerinema_sp._PCC_7407 0
Halothece_sp._PCC_7418 0
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 0
Anabaena_sp._90 0
Rubrobacter_xylanophilus_DSM_9941 1
Actinosynnema_mirum_DSM_43827 1
Nocardioides_sp._JS614 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 3
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Desulfotomaculum_ruminis_DSM_2154 0
Clostridium_difficile_630 1
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_cellulovorans_743B 0
Acetohalobium_arabaticum_DSM_5501 1
Exiguobacterium_sp._MH3 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_mucilaginosus_3016 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_megaterium_DSM_319 0
Gemmatimonas_aurantiaca_T-27 0
Melioribacter_roseus_P3M 1
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobium_luteolum_DSM_273 0
Chloroherpeton_thalassium_ATCC_35110 0
Niastella_koreensis_GR20-10 0
Rhodothermus_marinus_DSM_4252 1
Cyclobacterium_marinum_DSM_745 2
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 2
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 2
Alistipes_finegoldii_DSM_17242 1
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Solitalea_canadensis_DSM_3403 1
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 0
Krokinobacter_sp._4H-3-7-5 1
Gramella_forsetii_KT0803 1
Lacinutrix_sp._5H-3-7-4 0
Zobellia_galactanivorans 1
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_branchiophilum_FL-15 0
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 1
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 2
Pirellula_staleyi_DSM_6068 1
Opitutus_terrae_PB90-1 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Spirochaeta_smaragdinae_DSM_11293 0
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 0
Desulfurispirillum_indicum_S5 4
Flexistipes_sinusarabici_DSM_4947 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 0
Granulicella_tundricola_MP5ACTX9 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_roseus_DSM_18391 1
Candidatus_Nitrospira_defluvii 0
Candidatus_Methylomirabilis_oxyfera 0
Arcobacter_sp._L 1
Arcobacter_nitrofigilis_DSM_7299 0
uncultured_Sulfuricurvum_sp._RIFRC-1 1
Sulfuricurvum_kujiense_DSM_16994 0
Wolinella_succinogenes_DSM_1740 0
Sulfurovum_sp._NBC37-1 0
Desulfarculus_baarsii_DSM_2075 2
Desulfobacca_acetoxidans_DSM_11109 0
Syntrophus_aciditrophicus_SB 1
Desulfomonile_tiedjei_DSM_6799 2
Syntrophobacter_fumaroxidans_MPOB 0
Desulfobulbus_propionicus_DSM_2032 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 0
Desulfococcus_oleovorans_Hxd3 0
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_piezophilus 1
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_alaskensis_G20 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 2
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 0
Pelobacter_propionicus_DSM_2379 1
Pelobacter_carbinolicus_DSM_2380 1
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 3
Myxococcus_fulvus_HW-1 2
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 1
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 2
Aromatoleum_aromaticum_EbN1 1
Dechlorosoma_suillum_PS 1
Pseudogulbenkiania_sp._NH8B 1
Laribacter_hongkongensis_HLHK9 0
Chromobacterium_violaceum_ATCC_12472 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Rubrivivax_gelatinosus_IL144 2
Leptothrix_cholodnii_SP-6 0
Burkholderia_phymatum_STM815 1
Burkholderia_sp._RPE64 2
Burkholderia_sp._CCGE1002 1
Ramlibacter_tataouinensis_TTB310 0
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Acidovorax_sp._KKS102 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Nitrosospira_multiformis_ATCC_25196 1
Gallionella_capsiferriformans_ES-2 1
Methylotenera_versatilis_301 0
Methylotenera_mobilis_JLW8 0
Magnetococcus_marinus_MC-1 0
Caulobacter_segnis_ATCC_21756 1
Sphingomonas_sp._MM-1 0
Sphingomonas_wittichii_RW1 1
Pseudovibrio_sp._FO-BEG1 0
Rhodospirillum_photometricum_DSM_122 2
Tistrella_mobilis_KA081020-065 0
Magnetospirillum_magneticum_AMB-1 2
Rhodospirillum_centenum_SW 1
Rhodospirillum_rubrum_F11 2
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 3
Granulibacter_bethesdensis_CGDNIH1 0
Polymorphum_gilvum_SL003B-26A1 1
Starkeya_novella_DSM_506 0
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 0
Parvibaculum_lavamentivorans_DS-1 0
Ochrobactrum_anthropi_ATCC_49188 0
Brucella_microti_CCM_4915 0
Brucella_pinnipedialis_B2/94 0
Brucella_canis_ATCC_23365 0
Brucella_suis_ATCC_23445 0
Brucella_melitensis_ATCC_23457 0
Brucella_ovis_ATCC_25840 0
Brucella_abortus_S19 0
Sinorhizobium_medicae_WSM419 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Agrobacterium_tumefaciens_str._C58 0
Agrobacterium_sp._H13-3 0
Mesorhizobium_sp._BNC1 0
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Methylocella_silvestris_BL2 1
Pelagibacterium_halotolerans_B2 0
Hyphomicrobium_sp._MC1 1
Hyphomicrobium_denitrificans_ATCC_51888 0
Oligotropha_carboxidovorans_OM4 1
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_winogradskyi_Nb-255 1
Nitrobacter_hamburgensis_X14 0
Bradyrhizobium_japonicum_USDA_110 0
Bradyrhizobium_sp._ORS_278 1
Methylocystis_sp._SC2 0
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 0
Oceanimonas_sp._GK1 0
Shewanella_piezotolerans_WP3 0
Shewanella_denitrificans_OS217 0
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_frigidimarina_NCIMB_400 0
Glaciecola_nitratireducens_FR1064 0
Alteromonas_sp._SN2 0
Marinomonas_posidonica_IVIA-Po-181 0
Xanthomonas_albilineans_GPE_PC73 0
Thioalkalivibrio_sp._K90mix 1
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 0
Edwardsiella_tarda_EIB202 0
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1
Pseudomonas_protegens_Pf-5 0
Methylophaga_sp._JAM1 0
Methanosaeta_concilii_GP6 0
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 0
Methanospirillum_hungatei_JF-1 1
Archaeoglobus_veneficus_SNP6 1
Halopiger_xanaduensis_SH-6 1
Haloferax_mediterranei_ATCC_33500 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 1
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Crinalium_epipsammum_PCC_9333 2
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 4
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 0
Stanieria_cyanosphaera_PCC_7437 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 2
Chthonomonas_calidirosea_T49 0
Deinococcus_peraridilitoris_DSM_19664 0
Desulfosporosinus_meridiei_DSM_13257 1
Clostridium_difficile_BI1 1
Clostridium_difficile_R20291 1
Clostridium_difficile_CD196 1
Clostridium_saccharobutylicum_DSM_13864 0
Exiguobacterium_antarcticum_B7 1
Paenibacillus_mucilaginosus_K02 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_AH820 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_ATCC_14579 1
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Salinibacter_ruber_DSM_13855 0
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 0
Bacteroides_xylanisolvens_XB1A 0
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 0
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Spirochaeta_thermophila_DSM_6578 0
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 6
Desulfovibrio_vulgaris_RCH1 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2
Desulfovibrio_vulgaris_str._Hildenborough 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 1
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 3
Ralstonia_solanacearum_Po82 0
Burkholderia_ambifaria_MC40-6 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_EPS 0
Sulfuricella_denitrificans_skB26 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 2
Rhodospirillum_rubrum_ATCC_11170 2
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Brucella_ceti_TE10759-12 0
Brucella_ceti_TE28753-12 0
Brucella_canis_HSK_A52141 0
Brucella_suis_VBI22 0
Brucella_suis_1330 0
Brucella_suis_1330 0
Brucella_melitensis_NI 0
Brucella_melitensis_M5-90 0
Brucella_melitensis_M28 0
Brucella_abortus_A13334 0
Brucella_abortus_bv._1_str._9-941 0
Sinorhizobium_fredii_USDA_257 2
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_GR4 2
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_BL225C 1
Rhizobium_etli_CFN_42 1
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2
Liberibacter_crescens_BT-1 0
Candidatus_Liberibacter_americanus_str._Sao_Paulo 0
Mesorhizobium_australicum_WSM2073 0
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Rhodopseudomonas_palustris_DX-1 0
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 0
Rhodopseudomonas_palustris_CGA009 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Thioflavicoccus_mobilis_8321 0
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_mendocina_NK-01 0
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA7 1
Methylophaga_sp._JAM7 0
Methanolobus_psychrophilus_R15 1
Haloarcula_hispanica_N601 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 11
STRING_v9.0.5_(STRING) 95
Uniprot_2018_03_genome 41418
NCBI_2017_08_genome 4599
TargetDB__(Targets) 2

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