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Home > SCOP hierarchy > Domain combination - _gap_,55811,_gap_

Domain combinations for _gap_,55811,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55811 - Nudix

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 5

Pan_troglodytes_76_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_76_3.1 (Western gorilla) 4

Pongo_abelii_76_2 (Sumatran orangutan) 3

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 3

Papio_anubis_76 (Olive baboon) 5

Macaca_mulatta_76_1 (Rhesus monkey) 4

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 3

Otolemur_garnettii_76_3 (Small-eared galago) 4

Microcebus_murinus_76_1 (Gray mouse lemur) 2

Rattus_norvegicus_76_5.0 (Norway rat) 4

Mus_musculus_76_38 (House mouse) 5

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 2

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 3

Cavia_porcellus_76_3 (Domestic guinea pig) 3

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Ochotona_princeps_76 (American pika) 5

Tupaia_belangeri_76 (Northern tree shrew) 2

Sus_scrofa_76_10.2 (Pig) 4

Bos_taurus_76_3.1 (Cattle) 3

Ovis_aries_76_3.1 (Sheep) 2

Vicugna_pacos_76_1 (Alpaca) 2

Tursiops_truncatus_76_1 (Bottlenose dolphin) 3

Mustela_putorius_furo_76_1.0 (Domestic ferret) 3

Ailuropoda_melanoleuca_76_1 (Giant panda) 2

Canis_familiaris_76_3.1 (Dog) 2

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 2

Myotis_lucifugus_76_2.0 (Little brown bat) 2

Pteropus_vampyrus_76_1 (Large flying fox) 5

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 4

Loxodonta_africana_76_3 (African savanna elephant) 3

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 4

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_76_1.0 (Tammar wallaby) 2

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 5

Ornithorhynchus_anatinus_76_5 (Platypus) 1

Saccoglossus_kowalevskii_v3.0 5

Petromyzon_marinus_76_7.0 (Sea lamprey) 1

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_76_2.0 (Green anole) 2

Xenopus_laevis_ (African clawed frog) 8

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_76_1 (Coelacanth) 3

Lepisosteus_oculatus_76 (Spotted gar) 2

Gadus_morhua_76_1 (Atlantic cod) 2

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 4

Takifugu_rubripes_76_4 (Torafugu) 6

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 3

Oryzias_latipes_76_1 (Japanese medaka) 2

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 3

Astyanax_mexicanus_76 (Mexican tetra) 4

Danio_rerio_76_9 (Zebrafish) 3

Oikopleura_dioica 1

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_76 (Vase tunicate) 4

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 3

Adineta_vaga 13

Octopus_bimaculoides_280 3

Crassostrea_gigas_22 (Pacific oyster) 5

Lottia_gigantea_ (Owl limpet) 3

Helobdella_robusta_ 3

Capitella_sp._I_ 4

Danaus_plexippus_OGS1.0 (Monarch butterfly) 4

Heliconius_melpomene_ (Postman butterfly) 2

Bombyx_mori_ (Domestic silkworm) 1

Nasonia_vitripennis_ (Jewel wasp) 3

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 4

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 2

Linepithema_humile_v1.1 (Argentine ant) 3

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 2

Solenopsis_invicta_v.2.2.3 (Red fire ant) 2

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 3

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 2

Lucilia_cuprina (Australian sheep blowfly) 1

Drosophila_grimshawi_1.3 4

Drosophila_willistoni_1.3 4

Drosophila_pseudoobscura_2.13 5

Drosophila_persimilis_1.3 4

Drosophila_suzukii 4

Drosophila_yakuba_1.3 5

Drosophila_simulans_1.3 2

Drosophila_sechellia_1.3 4

Drosophila_melanogaster_76_5 (Fruit fly) 9

Drosophila_erecta_1.3 4

Drosophila_ananassae_1.3 6

Drosophila_virilis_1.2 3

Drosophila_mojavensis_1.3 3

Megaselia_scalaris_22 1

Aedes_aegypti_55_(Not_maintained) (Yellow fever mosquito) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 2

Anopheles_darlingi_22 (American malaria mosquito) 3

Anopheles_gambiae_49_3j (African malaria mosquito) 3

Tribolium_castaneum_3.0 (Red flour beetle) 3

Pediculus_humanus_corporis__(Early_assembly) (Human body louse) 2

Acyrthosiphon_pisum_ (Pea aphid) 2

Rhodnius_prolixus_22 1

Daphnia_pulex_ (Common water flea) 3

Strigamia_maritima_22 5

Sarcoptes_scabiei 1

Tetranychus_urticae_ (Two-spotted spider mite) 5

Ixodes_scapularis__(Preliminary) (Black-legged tick) 2

Pristionchus_pacificus_ 1

Meloidogyne_incognita_ (Southern root-knot nematode) 10

Meloidogyne_hapla_ 6

Onchocerca_volvulus_22 0

Caenorhabditis_brenneri_ 2

Caenorhabditis_remanei_ 1

Trichinella_spiralis_22 2

Hymenolepis_microstoma_ 2

Echinococcus_multilocularis_ 2

Echinococcus_granulosus_ 2

Taenia_solium_ (Pork tapeworm) 2

Schistosoma_mansoni_ 1

Mnemiopsis_leidyi (Sea walnut) 7

Acropora_digitifera_v1.0 1

Nematostella_vectensis_1.0 (Starlet sea anemone) 3

Hydra_vulgaris 4

Trichoplax_adhaerens_ 3

Proterospongia_sp._ATCC_50818_ 8

Monosiga_brevicollis_ 2

Sphaeroforma_arctica_JP610_ 1

Capsaspora_owczarzaki_ATCC_30864_ 5

Conidiobolus_coronatus_NRRL28638_v1.0 6

Mortierella_verticillata_NRRL_6337_ 1

Phycomyces_blakesleeanus_ 2

Rhizopus_oryzae_RA_99-880_ 0

Rhizomucor_miehei_CAU432_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 4

Ustilago_maydis_ 5

Mixia_osmundae_IAM_14324_v1.0 5

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3

Melampsora_laricis-populina_ 6

Rhodotorula_graminis_WP1_v1.0 3

Sporobolomyces_roseus_IAM_13481_ 3

Microbotryum_violaceum_22 5

Sphaerobolus_stellatus_v1.0 2

Piloderma_croceum_F_1598_v1.0 2

Serpula_lacrymans_var._lacrymans_S7.9_ 4

Coniophora_puteana 2

Hydnomerulius_pinastri_v2.0 3

Paxillus_rubicundulus_Ve08.2h10_v1.0 2

Pisolithus_tinctorius_Marx_270_v1.0 2

Scleroderma_citrinum_Foug_A_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 5

Pleurotus_ostreatus_ (Oyster mushroom) 2

Amanita_thiersii_Skay4041_v1.0 4

Amanita_muscaria_Koide_v1.0 (Fly agaric) 2

Galerina_marginata_v1.0 3

Hebeloma_cylindrosporum_h7_v2.0 2

Laccaria_bicolor_S238N-H82_ 3

Agaricus_bisporus_var._bisporus_ 2

Schizophyllum_commune_ 3

Stereum_hirsutum_FP-91666_SS1__v1.0 3

Heterobasidion_annosum_ 2

Gloeophyllum_trabeumv1.0 4

Punctularia_strigosozonata_v1.0 3

Sebacina_vermifera_MAFF_305830_v1.0 3

Fomitiporia_mediterranea_v1.0 3

Tulasnella_calospora_AL13/4D_v1.0 2

Postia_placenta_ 5

Wolfiporia_cocos_MD-104_SS10__v1.0 3

Fomitopsis_pinicolav1.0 2

Fomitopsis_pinicola_FP-58527_SS1_v3.0 3

Phanerochaete_chrysosporium_RP-78_2.1 2

Dichomitus_squalens 3

Trametes_versicolor_v1.0 3

Tremella_mesenterica_ (Witches' butter) 2

Daldinia_eschscholzii_EC12_v1.0 2

Magnaporthe_poae_ATCC_64411_22 3

Magnaporthe_grisea_70-15_ 3

Podospora_anserina_ 3

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 2

Chaetomium_globosum_CBS_148.51_ 2

Neurospora_tetrasperma_ 3

Neurospora_discreta_FGSC_8579_ 2

Neurospora_crassa_OR74A_ 4

Cryphonectria_parasitica_ (Chestnut blight fungus) 5

Verticillium_albo-atrum_VaMs.102_ 2

Verticillium_dahliae_VdLs.17_ 2

Acremonium_alcalophilumv_1.0 4

Glomerella_graminicola_22 2

Fusarium_graminearum_ 3

Nectria_haematococca_mpVI_ 3

Fusarium_oxysporum_f._sp._lycopersici_4286_ 2

Fusarium_verticillioides_7600_ 2

Trichoderma_asperellum_CBS_433.97_v1.0 1

Trichoderma_atroviride_ 1

Trichoderma_citrinoviride_v1.0 2

Trichoderma_reesei_1.2 2

Trichoderma_virens_Gv29-8_ 2

Trichoderma_longibrachiatum_ATCC_18648_v1.0 2

Trichoderma_harzianum_CBS_226.95_v1.0 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 1

Sclerotinia_sclerotiorum_ 2

Blumeria_graminis_22 2

Didymella_exigua_CBS_183.55_v1.0 3

Leptosphaeria_maculans_22 3

Setosphaeria_turcica_v1.0 2

Cochliobolus_miyabeanus_ATCC_44560_v1.0 2

Cochliobolus_victoriae_FI3_v1.0 2

Cochliobolus_carbonum_26-R-13_v1.0 3

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 2

Alternaria_brassicicola_ 3

Cochliobolus_lunatus_m118_v2.0 2

Pyrenophora_teres_f._teres_22 2

Pyrenophora_tritici-repentis_ 2

Stagonospora_nodorum_ 2

Dothistroma_septosporum 1

Septoria_musiva_v1.0 1

Mycosphaerella_fijiensis_CIRAD86_ 2

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 2

Coccidioides_immitis_RS_ 2

Ajellomyces_dermatitidis_SLH14081_ 2

Arthroderma_benhamiae_CBS_112371_ 1

Uncinocarpus_reesii_1704_ 1

Aspergillus_zonatus_v1.0 2

Penicillium_chrysogenum_Wisconsin_54-1255_ 2

Penicillium_chrysogenum_v1.0 2

Aspergillus_acidus_v1.0 4

Aspergillus_fumigatus_Af293 4

Aspergillus_brasiliensis_v1.0 2

Aspergillus_nidulans_FGSC_A4_ 3

Aspergillus_sydowii_v1.0 4

Aspergillus_versicolor_v1.0 4

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 3

Neosartorya_fischeri_NRRL_181_ 4

Aspergillus_terreus_NIH2624_ 3

Aspergillus_tubingensis_v1.0 4

Aspergillus_wentii_v1.0 3

Aspergillus_oryzae_RIB40_ 2

Aspergillus_niger_22 2

Aspergillus_niger_ATCC_1015_ 2

Aspergillus_flavus_NRRL3357_ 2

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 3

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Hansenula_polymorpha_v2.0 1

Candida_parapsilosis_ 1

Wickerhamomyces_anomalus 0

Yarrowia_lipolytica_CLIB122 2

Candida_glabrata_CBS138 1

Lachancea_kluyveri_ 1

Catenaria_anguillulae_PL171_v1.0 3

Allomyces_macrogynus_ATCC_38327_ 4

Spizellomyces_punctatus_DAOM_BR117_ 2

Dictyostelium_discoideum 4

Dictyostelium_purpureum_ 7

Selaginella_moellendorffii_ 1

Eucalyptus_grandis_v201 (Rose gum) 2

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 5

Citrus_sinensis_v154 (Sweet orange) 2

Thellungiella_halophila_v173 3

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 3

Capsella_rubella_v183 1

Arabidopsis_lyrata_ (Lyrate rockcress) 2

Arabidopsis_thaliana_10 (Thale cress) 2

Medicago_truncatula_ (Barrel medic) 2

Phaseolus_vulgaris_v186 (French bean) 4

Glycine_max_v109 (Soybean) 5

Cucumis_sativus_v122 (Cucumber) 3

Fragaria_vesca_ (Wild strawberry) 4

Malus_domestica_v196 (Apple) 11

Prunus_persica_v139 (Peach) 2

Linum_usitatissimum_v200 (Flax) 3

Manihot_esculenta_v147 (Cassava) 2

Populus_trichocarpa_v156 (Black cottonwood) 2

Vitis_vinifera_ (Wine grape) 2

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 4

Actinidia_chinensis_Hongyang_ 4

Aquilegia_coerulea_v195 2

Triticum_urartu_22 2

Brachypodium_distachyon_ (Stiff brome) 1

Oryza_meridionalis_22 2

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 1

Oryza_nivara_22 2

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1

Panicum_virgatum_v202 (Switchgrass) 1

Setaria_italica_v164 (Foxtail millet) 2

Zea_mays_subsp._mays_ (Maize) 2

Zea_mays_v181 (Maize) 2

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 0

Musa_acuminata_22 (Wild Malaysian banana) 2

Amborella_trichopoda_22 1

Coccomyxa_subellipsoidea_sp._C-169_v2 0

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Chlorella_variabilis_sp._NC64A_ 1

Chlorella_vulgaris_ 1

Volvox_carteri_f._nagariensis_ 4

Volvox_carteri_v199 6

Chlamydomonas_reinhardtii_4.0 4

Bathycoccus_prasinos_ 2

Micromonas_sp._RCC299_ 3

Micromonas_pusilla_CCMP1545_v3.0 3

Cyanidioschyzon_merolae_strain_10D_22 3

Cyanidioschyzon_merolae 3

Porphyridium_purpureum_02_2012 1

Thecamonas_trahens_ATCC_50062_ 3

Bigelowiella_natans_CCMP2755_22 9

Giardia_lamblia_2.3 1

Cyanophora_paradoxa_ 1

Leishmania_mexicana_2.4 4

Leishmania_major_strain_Friedlin_ 4

Leishmania_infantum_JPCM5_2.4 4

Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4

Trypanosoma_vivax_ 3

Trypanosoma_cruzi_strain_CL_Brener 2

Trypanosoma_congolense_2.4 3

Trypanosoma_brucei_gambiense_v4.1 2

Trypanosoma_brucei_TREU927_v4.1 3

Ectocarpus_siliculosus 2

Aureococcus_anophagefferens_ 0

Pythium_iwayamai_DAOM_BR242034_22 0

Pythium_ultimum_v1.7-2 0

Pythium_irregulare_DAOM_BR486_22 0

Phytophthora_capsici_ 0

Phaeodactylum_tricornutumCCAP_1055/1 1

Fragilariopsis_cylindrus 2

Thalassiosira_pseudonana_CCMP1335 2

Perkinsus_marinus_ATCC_50983_ 0

Paramecium_tetraurelia_ 3

Tetrahymena_thermophila_SB210_1_ 8

Neospora_caninum 1

Toxoplasma_gondii_VEG 2

Toxoplasma_gondii_ME49 1

Toxoplasma_gondii_GT1 2

Plasmodium_vivax_SaI-1_7.0 1

Plasmodium_knowlesi_strain_H_ 1

Symbiodinium_minutum_clade_B1_v1.2 6

Naegleria_gruberi_ 2

Trichomonas_vaginalis_ 1

Guillardia_theta_CCMP2712_v1.0_ 2

Emiliania_huxleyi_CCMP1516_ 6

Ilumatobacter_coccineus 2

Thermobispora_bispora_DSM_43833 1

Blastococcus_saxobsidens_DD2 1

Frankia_sp._EAN1pec 1

Frankia_alni_ACN14a 1

Streptomyces_coelicolor_A3(2) 1

Streptomyces_sp._PAMC26508 1

Streptomyces_flavogriseus_ATCC_33331 1

Streptomyces_sp._SirexAA-E 1

Streptomyces_griseus_subsp._griseus_NBRC_13350 1

Streptomyces_bingchenggensis_BCW-1 1

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1

Tsukamurella_paurometabola_DSM_20162 1

Gordonia_sp._KTR9 2

Gordonia_polyisoprenivorans_VH2 1

Gordonia_bronchialis_DSM_43247 1

Amycolicicoccus_subflavus_DQS3-9A1 1

Mycobacterium_abscessus_ATCC_19977 1

Mycobacterium_vanbaalenii_PYR-1 1

Mycobacterium_gilvum_PYR-GCK 1

Mycobacterium_chubuense_NBB4 1

Corynebacterium_urealyticum_DSM_7109 1

Corynebacterium_jeikeium_K411 2

Corynebacterium_variabile_DSM_44702 1

Intrasporangium_calvum_DSM_43043 1

[Cellvibrio]_gilvus_ATCC_13127 1

Arthrobacter_phenanthrenivorans_Sphe3 1

Arthrobacter_chlorophenolicus_A6 1

Arthrobacter_aurescens_TC1 1

Arthrobacter_arilaitensis_Re117 1

Kocuria_rhizophila_DC2201 1

Rothia_mucilaginosa_DY-18 1

Rothia_dentocariosa_ATCC_17931 1

Arthrobacter_sp._Rue61a 1

Arthrobacter_sp._FB24 1

Renibacterium_salmoninarum_ATCC_33209 1

Micrococcus_luteus_NCTC_2665 1

Clostridium_phytofermentans_ISDg 1

Odoribacter_splanchnicus_DSM_20712 0

Syntrophobacter_fumaroxidans_MPOB 1

Desulfatibacillum_alkenivorans_AK-01 1

Pelobacter_propionicus_DSM_2379 1

Pelobacter_carbinolicus_DSM_2380 1

Ralstonia_solanacearum_CFBP2957 1

Alicycliphilus_denitrificans_K601 1

Polaromonas_naphthalenivorans_CJ2 1

Variovorax_paradoxus_S110 1

Sphingomonas_wittichii_RW1 1

Azospirillum_sp._B510 1

Parvibaculum_lavamentivorans_DS-1 1

Hahella_chejuensis_KCTC_2396 1

Methylomicrobium_alcaliphilum 1

Methylomonas_methanica_MC09 1

Legionella_longbeachae_NSW150 0

Halorubrum_lacusprofundi_ATCC_49239 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 7

Drosophila_melanogaster_FlyBase_5.12_(FlyBase) (Fruit fly) 7

Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase) (African malaria mosquito) 3

Ascaris_suum_Victoria/Ghent_ (Pig roundworm) 2

Cryptococcus_neoformans_var._grubii_H99_ 2

Cryptococcus_neoformans_B-3501A_ 2

Cryptococcus_neoformans_JEC21_ 2

Paracoccidioides_brasiliensis_Pb03_ 2

Coccidioides_immitis_RMSCC_3703_ 1

Coccidioides_immitis_RMSCC_2394_ 2

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 2

Histoplasma_capsulatum_H143 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 2

Aspergillus_fumigatus_A1163_ 4

Batrachochytrium_dendrobatidis_JEL423_ 1

Batrachochytrium_dendrobatidis_JAM81_ 1

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 3

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 4

Trypanosoma_brucei_Lister_427_v4.1 2

Neospora_caninum_Nc-Liverpool_6.2 1

Frankia_sp._EuI1c 1

Frankia_sp._CcI3 1

Nocardiopsis_alba_ATCC_BAA-2165 1

Streptomyces_albus_J1074 1

Streptomyces_davawensis_JCM_4913 1

Streptomyces_collinus_Tu_365 1

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1

Mycobacterium_abscessus_subsp._bolletii_50594 1

Mycobacterium_gilvum_Spyr1 1

Corynebacterium_terpenotabidum_Y-11 1

Corynebacterium_urealyticum_DSM_7111 1

Desulfobacula_toluolica_Tol2 1

Geobacter_sp._M18 1

Sorangium_cellulosum_So0157-2 1

Ralstonia_solanacearum_FQY_4 1

Ralstonia_solanacearum_Po82 2

Ralstonia_solanacearum_PSI07 1

Ralstonia_solanacearum_CMR15 1

Ralstonia_solanacearum_GMI1000 1

Alicycliphilus_denitrificans_BC 1

Variovorax_paradoxus_EPS 1

Sinorhizobium_fredii_HH103 0

Vibrio_nigripulchritudo_VibrioScope 1

Stenotrophomonas_maltophilia_JV3 1

Legionella_pneumophila_str._Paris 1

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 4

Pan_troglodytes_69_2.1.4 (Chimpanzee) 3

Gorilla_gorilla_69_3.1 (Western gorilla) 3

Pongo_abelii_69_2 (Sumatran orangutan) 3

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 3

Macaca_mulatta_69_1 (Rhesus monkey) 3

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 4

Microcebus_murinus_69_1 (Gray mouse lemur) 2

Rattus_norvegicus_69_3.4 (Norway rat) 4

Mus_musculus_69_38 (House mouse) 4

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 3

Oryctolagus_cuniculus_69_2 (Rabbit) 1

Ochotona_princeps_69 (American pika) 5

Tupaia_belangeri_69 (Northern tree shrew) 2

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 3

Vicugna_pacos_69_1 (Alpaca) 2

Tursiops_truncatus_69_1 (Bottlenose dolphin) 3

Mustela_putorius_furo_69_1.0 (Domestic ferret) 3

Ailuropoda_melanoleuca_69_1 (Giant panda) 2

Canis_familiaris_69_3.1 (Dog) 2

Felis_catus_69 (Domestic cat) 1

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 2

Pteropus_vampyrus_69_1 (Large flying fox) 5

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 4

Loxodonta_africana_69_3 (African savanna elephant) 3

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Macropus_eugenii_69_1.0 (Tammar wallaby) 2

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 5

Ornithorhynchus_anatinus_69_5 (Platypus) 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 3

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 2

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 3

Gadus_morhua_69_1 (Atlantic cod) 2

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 3

Takifugu_rubripes_69_4 (Torafugu) 3

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 3

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 3

Danio_rerio_69_9 (Zebrafish) 3

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_69 (Vase tunicate) 3

Drosophila_melanogaster_69_5 (Fruit fly) 5

Arabidopsis_thaliana_10 (Thale cress) 2

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 7

Homo_sapiens__(NCBI_version) (Human) 4

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 4

Moniliophthora_perniciosa_FA553__(Genome_survey) 1

Picea_sitchensis__(Incomplete) (Sitka spruce) 1

Malus_x_domestica_(Duplicate) (Apple) 11

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 6

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

Phoenix_dactylifera__(Early_draft) (Date palm) 1

NCBI_plasmid_sequences_(Plasmids) 9

PDB_chains_(SCOP_1.75)_(PDB) 1

NCBI_viral_sequences_(Viral) 3

Protozoadb_2010_08_(Protozoadb) 30

STRING_v9.0.5_(STRING) 273

Uniprot_2018_03_genome 21165

Protein_Data_Bank_(all_PDB_sequenc) 9

NCBI_2017_08_genome 5342

UniProt__viral_sequences_(Viral) 1

TargetDB__(Targets) 11

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4

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Domain combinations for _gap_,55811,_gap_ superfamilies in groups of genomes