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Domain combinations for _gap_,55846,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55846 - N-acetylmuramoyl-L-alanine amidase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Oikopleura_dioica 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_suzukii 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Sarcoptes_scabiei 1
Paracoccidioides_brasiliensis_Pb18_ 1
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Aspergillus_zonatus_v1.0 0
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanophora_paradoxa_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Thermobaculum_terrenum_ATCC_BAA-798 2
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 1
Conexibacter_woesei_DSM_14684 1
Rubrobacter_xylanophilus_DSM_9941 1
Ilumatobacter_coccineus 1
Thermobispora_bispora_DSM_43833 1
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 1
Thermobifida_fusca_YX 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 3
Thermomonospora_curvata_DSM_43183 2
Streptosporangium_roseum_DSM_43021 0
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_avermitilis_MA-4680 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 3
Actinosynnema_mirum_DSM_43827 0
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 1
Propionibacterium_acnes_SK137 1
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 2
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Amycolicicoccus_subflavus_DQS3-9A1 2
Mycobacterium_abscessus_ATCC_19977 1
Mycobacterium_sp._JLS 1
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_avium_104 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_gilvum_PYR-GCK 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Corynebacterium_aurimucosum_ATCC_700975 1
Corynebacterium_efficiens_YS-314 2
Corynebacterium_ulcerans_0102 2
Corynebacterium_pseudotuberculosis_316 1
Corynebacterium_glutamicum_R 1
Corynebacterium_diphtheriae_NCTC_13129 2
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 1
Xylanimonas_cellulosilytica_DSM_15894 2
Cellulomonas_flavigena_DSM_20109 1
Cellulomonas_fimi_ATCC_484 1
[Cellvibrio]_gilvus_ATCC_13127 1
Micrococcus_luteus_NCTC_2665 0
Mobiluncus_curtisii_ATCC_43063 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Anaerolinea_thermophila_UNI-1 1
Thermomicrobium_roseum_DSM_5159 2
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 2
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Symbiobacterium_thermophilum_IAM_14863 1
Ruminococcus_sp. 1
butyrate-producing_bacterium_SS3/4 1
Clostridium_novyi_NT 0
Clostridium_perfringens_ATCC_13124 0
Lactobacillus_crispatus_ST1 1
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_helveticus_DPC_4571 1
Lactobacillus_buchneri_NRRL_B-30929 1
Lactobacillus_buchneri 1
Lactobacillus_brevis_ATCC_367 2
Lactobacillus_acidophilus_30SC 1
Pediococcus_pentosaceus_ATCC_25745 1
Streptococcus_parauberis_KCTC_11537 3
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Bacillus_weihenstephanensis_KBAB4 3
Bacillus_thuringiensis_str._Al_Hakam 3
Bacillus_cereus_03BB102 3
Bacillus_anthracis_str._A0248 1
Macrococcus_caseolyticus_JCSC5402 0
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_haemolyticus_JCSC1435 0
Staphylococcus_epidermidis_RP62A 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 0
Chlorobium_tepidum_TLS 1
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Rhodothermus_marinus_DSM_4252 1
Candidatus_Amoebophilus_asiaticus_5a2 1
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 1
Pedobacter_saltans_DSM_12145 1
Pedobacter_heparinus_DSM_2366 1
Sphingobacterium_sp._21 1
Owenweeksia_hongkongensis_DSM_17368 1
Cellulophaga_algicola_DSM_14237 0
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 1
Phycisphaera_mikurensis_NBRC_102666 1
Opitutus_terrae_PB90-1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Candidatus_Solibacter_usitatus_Ellin6076 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1
Desulfobacterium_autotrophicum_HRM2 1
Haliangium_ochraceum_DSM_14365 4
Burkholderia_sp._RPE64 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Nitrosomonas_eutropha_C91 1
Caulobacter_segnis_ATCC_21756 1
Roseobacter_denitrificans_OCh_114 1
Wolbachia_sp._wRi 1
Orientia_tsutsugamushi_str._Boryong 1
Shewanella_sediminis_HAW-EB3 1
Legionella_pneumophila_str._Corby 1
Natrialba_magadii_ATCC_43099 1
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Synechococcus_sp._RCC307 1
Synechococcus_elongatus_PCC_6301 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7425 2
Cylindrospermum_stagnale_PCC_7417 1
Nocardiopsis_alba_ATCC_BAA-2165 3
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 3
Propionibacterium_avidum_44067 1
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Actinoplanes_friuliensis_DSM_7358 2
Rhodococcus_pyridinivorans_SB3094 1
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 1
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 1
Mycobacterium_abscessus_subsp._bolletii_50594 2
Mycobacterium_liflandii_128FXT 1
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_kansasii_ATCC_12478 1
Corynebacterium_maris_DSM_45190 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1
Corynebacterium_ulcerans_BR-AD22 2
Corynebacterium_ulcerans_809 1
Corynebacterium_argentoratense_DSM_44202 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_pseudotuberculosis_258 1
Corynebacterium_pseudotuberculosis_Cp162 1
Corynebacterium_pseudotuberculosis_P54B96 1
Corynebacterium_pseudotuberculosis_267 1
Corynebacterium_pseudotuberculosis_1/06-A 1
Corynebacterium_pseudotuberculosis_42/02-A 1
Corynebacterium_pseudotuberculosis_3/99-5 1
Corynebacterium_pseudotuberculosis_31 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Corynebacterium_pseudotuberculosis_PAT10 1
Corynebacterium_pseudotuberculosis_I19 1
Corynebacterium_pseudotuberculosis_FRC41 1
Corynebacterium_pseudotuberculosis_C231 1
Corynebacterium_pseudotuberculosis_1002 1
Corynebacterium_glutamicum_MB001 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_diphtheriae_BH8 1
Corynebacterium_diphtheriae_INCA_402 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 1
Corynebacterium_diphtheriae_HC01 1
Corynebacterium_diphtheriae_241 1
Corynebacterium_diphtheriae_CDCE_8392 1
Corynebacterium_diphtheriae_PW8 1
Corynebacterium_diphtheriae_C7_(beta) 1
Corynebacterium_diphtheriae_31A 1
Actinomyces_viscosus_C505 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Clostridium_perfringens_str._13 0
Lactobacillus_amylovorus_GRL_1112 1
Lactobacillus_helveticus_R0052 1
Lactobacillus_helveticus_H10 1
Lactobacillus_helveticus_CNRZ32 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1
Lactobacillus_brevis_KB290 2
Lactobacillus_acidophilus_La-14 1
Lactobacillus_acidophilus_NCFM 1
Pediococcus_pentosaceus_SL4 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 2
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 4
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 3
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2
Bacillus_thuringiensis_BMB171 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2
Bacillus_cereus_FRI-35 2
Bacillus_cereus_biovar_anthracis_str._CI 3
Bacillus_cereus_AH820 3
Bacillus_cereus_AH187 3
Bacillus_cereus_B4264 3
Bacillus_cereus_G9842 2
Bacillus_cereus_Q1 3
Bacillus_cereus_F837/76 3
Bacillus_cereus_NC7401 3
Bacillus_cereus_E33L 2
Bacillus_cereus_ATCC_10987 3
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_lugdunensis_N920143 0
Staphylococcus_warneri_SG1 0
Staphylococcus_epidermidis_ATCC_12228 1
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_M1 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_ST228/18412 0
Staphylococcus_aureus_ST228/18341 0
Staphylococcus_aureus_ST228/16125 0
Staphylococcus_aureus_ST228/16035 0
Staphylococcus_aureus_ST228/15532 0
Staphylococcus_aureus_ST228/10497 0
Staphylococcus_aureus_ST228/10388 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 0
Staphylococcus_aureus_subsp._aureus_VC40 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED133 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_55/2053 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 0
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MSSA476 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_MW2 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_COL 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Echinicola_vietnamensis_DSM_17526 1
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Burkholderia_phenoliruptrix_BR3459a 1
Burkholderia_sp._CCGE1001 1
Burkholderia_thailandensis_MSMB121 1
Orientia_tsutsugamushi_str._Ikeda 1
Bradyrhizobium_oligotrophicum_S58 1
Stenotrophomonas_maltophilia_D457 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_2300/99_Alcoy 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Felis_catus_69   (Domestic cat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 5
TargetDB__(Targets) 7
UniProt__viral_sequences_(Viral) 25
NCBI_viral_sequences_(Viral) 66
STRING_v9.0.5_(STRING) 140
Uniprot_2018_03_genome 20460
NCBI_2017_08_genome 14083

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