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  Home > SCOP hierarchy > Domain combination - _gap_,55961

Domain combinations for _gap_,55961 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55961 - Bet v1-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   5
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   3
Mus_musculus_76_38   (House mouse)   7
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   5
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   3
Sus_scrofa_76_10.2   (Pig)   10
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   6
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   4
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   4
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   6
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9
Takifugu_rubripes_76_4   (Torafugu)   8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   4
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   10
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 6
Octopus_bimaculoides_280 5
Crassostrea_gigas_22   (Pacific oyster)   4
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 2
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   2
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 2
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   4
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 0
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 2
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 2
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Hansenula_polymorpha_v2.0 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Wickerhamomyces_anomalus 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Kluyveromyces_lactis 1
Catenaria_anguillulae_PL171_v1.0 2
Allomyces_macrogynus_ATCC_38327_ 2
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   6
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   9
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 10
Citrus_clementina_v165 7
Citrus_sinensis_v154   (Sweet orange)   6
Thellungiella_halophila_v173 10
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   7
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   8
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   17
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   8
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   6
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   5
Solanum_tuberosum_   (Potato)   13
Actinidia_chinensis_Hongyang_ 8
Aquilegia_coerulea_v195 16
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   3
Oryza_punctata_22 3
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7
Panicum_virgatum_v202   (Switchgrass)   10
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   11
Zea_mays_v181   (Maize)   13
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 3
Physcomitrella_patens 9
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Cyanidioschyzon_merolae_strain_10D_22 5
Cyanidioschyzon_merolae 5
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 4
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 6
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 4
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 4
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 7
Pythium_arrhenomanes_ATCC_12531_22 9
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 7
Pythium_irregulare_DAOM_BR486_22 6
Pythium_vexans_DAOM_BR484_22 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 7
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 5
Phaeodactylum_tricornutumCCAP_1055/1 8
Fragilariopsis_cylindrus 7
Thalassiosira_pseudonana_CCMP1335 8
Perkinsus_marinus_ATCC_50983_ 5
Paramecium_tetraurelia_ 23
Tetrahymena_thermophila_SB210_1_ 6
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 63
Plasmodium_chabaudi_ 106
Plasmodium_berghei_ANKA_ 20
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 4
Guillardia_theta_CCMP2712_v1.0_ 6
Emiliania_huxleyi_CCMP1516_ 10
Pseudanabaena_sp._PCC_7367 1
Microcoleus_sp._PCC_7113 1
Gloeocapsa_sp._PCC_7428 1
Gloeobacter_violaceus_PCC_7421 1
Nostoc_sp._PCC_7524 1
Conexibacter_woesei_DSM_14684 1
Ilumatobacter_coccineus 0
Thermobispora_bispora_DSM_43833 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 0
Frankia_sp._EAN1pec 2
Frankia_alni_ACN14a 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2
Streptosporangium_roseum_DSM_43021 1
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Pseudonocardia_dioxanivorans_CB1190 1
Saccharopolyspora_erythraea_NRRL_2338 0
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 0
Propionibacterium_acnes_SK137 1
Microlunatus_phosphovorus_NM-1 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Segniliparus_rotundus_DSM_44985 1
Gordonia_sp._KTR9 0
Gordonia_polyisoprenivorans_VH2 0
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 0
Rhodococcus_opacus_B4 1
Nocardia_farcinica_IFM_10152 0
Mycobacterium_sp._JLS 0
Mycobacterium_intracellulare_ATCC_13950 0
Mycobacterium_avium_104 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_chubuense_NBB4 0
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 0
Beutenbergia_cavernae_DSM_12333 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_sp._FB24 0
Herpetosiphon_aurantiacus_DSM_785 1
Truepera_radiovictrix_DSM_17093 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 1
Deinococcus_proteolyticus_MRP 1
Deinococcus_radiodurans_R1 1
Symbiobacterium_thermophilum_IAM_14863 1
Gemmatimonas_aurantiaca_T-27 1
Chlorobium_tepidum_TLS 1
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 2
Salinibacter_ruber_M8 0
Flexibacter_litoralis_DSM_6794 1
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 2
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Pedobacter_heparinus_DSM_2366 3
Owenweeksia_hongkongensis_DSM_17368 1
Maribacter_sp._HTCC2170 1
Zobellia_galactanivorans 1
Flavobacterium_johnsoniae_UW101 1
Planctomyces_brasiliensis_DSM_5305 1
Rhodopirellula_baltica_SH_1 0
Turneriella_parva_DSM_21527 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Candidatus_Solibacter_usitatus_Ellin6076 3
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Candidatus_Methylomirabilis_oxyfera 0
Bdellovibrio_bacteriovorus_HD100 1
Geobacter_daltonii_FRC-32 1
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 1
Sorangium_cellulosum_'So_ce_56' 2
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 2
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 0
Aromatoleum_aromaticum_EbN1 1
Burkholderia_phytofirmans_PsJN 0
Burkholderia_xenovorans_LB400 1
Cupriavidus_necator_N-1 2
Burkholderia_sp._CCGE1002 0
Burkholderia_thailandensis_E264 2
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_vietnamiensis_G4 0
Verminephrobacter_eiseniae_EF01-2 0
Ramlibacter_tataouinensis_TTB310 0
Variovorax_paradoxus_S110 2
Comamonas_testosteroni_CNB-2 0
Janthinobacterium_sp._Marseille 1
Pusillimonas_sp._T7-7 0
Bordetella_parapertussis_12822 0
Bordetella_bronchiseptica_RB50 0
Achromobacter_xylosoxidans_A8 0
Achromobacter_xylosoxidans 0
Caulobacter_sp._K31 1
Novosphingobium_sp._PP1Y 0
Novosphingobium_aromaticivorans_DSM_12444 0
Sphingobium_sp._SYK-6 0
Sphingobium_chlorophenolicum_L-1 0
Sphingomonas_wittichii_RW1 0
Hirschia_baltica_ATCC_49814 1
Pseudovibrio_sp._FO-BEG1 0
Jannaschia_sp._CCS1 1
Ruegeria_pomeroyi_DSS-3 0
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Gluconacetobacter_xylinus_NBRC_3288 1
Granulibacter_bethesdensis_CGDNIH1 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Starkeya_novella_DSM_506 0
Azorhizobium_caulinodans_ORS_571 0
Methylobacterium_chloromethanicum_CM4 2
Methylobacterium_populi_BJ001 2
Ochrobactrum_anthropi_ATCC_49188 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 2
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_radiobacter_K84 1
Agrobacterium_vitis_S4 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2
Hyphomicrobium_sp._MC1 0
Bradyrhizobium_japonicum_USDA_110 0
Vibrio_furnissii_NCTC_11218 0
Glaciecola_sp._4H-3-7+YE-5 1
Marinobacter_adhaerens_HP15 0
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_oceani_ATCC_19707 1
gamma_proteobacterium_HdN1 1
Photorhabdus_asymbiotica 0
Photorhabdus_luminescens_subsp._laumondii_TTO1 0
Enterobacteriaceae_bacterium_strain_FGI_57 0
Shigella_sonnei_Ss046 0
Shigella_flexneri_5_str._8401 0
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 0
Pseudomonas_sp._UW4 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Acinetobacter_baumannii_ATCC_17978 1
Acinetobacter_sp._ADP1 1
Cycloclasticus_sp._P1 0
Sulfolobus_acidocaldarius_DSM_639 1
Halopiger_xanaduensis_SH-6 2
Haloterrigena_turkmenica_DSM_5511 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 2
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Anabaena_cylindrica_PCC_7122 1
Frankia_sp._EuI1c 3
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 3
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_pyridinivorans_SB3094 1
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_sp._JDM601 0
Mycobacterium_liflandii_128FXT 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_yongonense_05-1390 0
Mycobacterium_intracellulare_MOTT-64 0
Mycobacterium_indicus_pranii_MTCC_9506 0
Mycobacterium_intracellulare_MOTT-02 0
Mycobacterium_avium_subsp._paratuberculosis_MAP4 0
Mycobacterium_avium_subsp._paratuberculosis_K-10 0
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_kansasii_ATCC_12478 2
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Dehalococcoides_sp._VS 1
Deinococcus_peraridilitoris_DSM_19664 1
Thermus_thermophilus_JL-18 0
Emticicia_oligotrophica_DSM_17448 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Sorangium_cellulosum_So0157-2 3
Myxococcus_stipitatus_DSM_14675 2
Burkholderia_phenoliruptrix_BR3459a 0
Ralstonia_solanacearum_PSI07 0
Burkholderia_sp._YI23 0
Burkholderia_sp._CCGE1003 0
Burkholderia_sp._CCGE1001 0
Burkholderia_sp._KJ006 0
Burkholderia_thailandensis_MSMB121 2
Burkholderia_pseudomallei_MSHR305 2
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 2
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 2
Burkholderia_pseudomallei_K96243 2
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 3
Burkholderia_lata 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_J2315 0
Variovorax_paradoxus_B4 2
Variovorax_paradoxus_EPS 2
Bordetella_parapertussis_Bpp5 0
Bordetella_bronchiseptica_MO149 0
Bordetella_bronchiseptica_253 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Octadecabacter_arcticus_238 1
Paracoccus_aminophilus_JCM_7686 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Gluconobacter_oxydans_H24 1
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_GR4 2
Sinorhizobium_meliloti_Rm41 2
Sinorhizobium_meliloti_SM11 2
Sinorhizobium_meliloti_BL225C 2
Sinorhizobium_meliloti_1021 5
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Mesorhizobium_australicum_WSM2073 2
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_japonicum_USDA_6 0
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._2457T 0
Shigella_flexneri_2a_str._301 0
Shigella_boydii_Sb227 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_P12b 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_UMNK88 0
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 0
Escherichia_coli_IAI1 0
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_ATCC_8739 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_SMS-3-5 0
Escherichia_coli_SE11 0
Escherichia_coli_O103:H2_str._12009 0
Escherichia_coli_HS 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Escherichia_coli_B_str._REL606 0
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_S16 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_resinovorans_NBRC_106553 1
Pseudomonas_mendocina_NK-01 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Acinetobacter_radioresistens__SH164 0
Acinetobacter_lwoffii__SH145 0
Cycloclasticus_zancles_7-ME 0
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Natrinema_pellirubrum_DSM_15624 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   4
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   4
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   3
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   4
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2
Arabidopsis_thaliana_10   (Thale cress)   6

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   7
Homo_sapiens__(NCBI_version)   (Human)   5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 11
Malus_x_domestica_(Duplicate)   (Apple)   17
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 10
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   5
Phoenix_dactylifera__(Early_draft)   (Date palm)   7
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 28
Protein_Data_Bank_(all_PDB_sequenc) 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 162
Protozoadb_2010_08_(Protozoadb) 166
STRING_v9.0.5_(STRING) 435
Uniprot_2018_03_genome 22005
TargetDB__(Targets) 20
NCBI_2017_08_genome 15780

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.