SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,56091,50249,47781,52113 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56091 - DNA ligase/mRNA capping enzyme, catalytic domain
50249 - Nucleic acid-binding proteins
47781 - RuvA domain 2-like
52113 - BRCT domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Olsenella_uli_DSM_7084 1
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 1
Geodermatophilus_obscurus_DSM_43160 1
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 1
Frankia_alni_ACN14a 1
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Nocardioides_sp._JS614 1
Microlunatus_phosphovorus_NM-1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 1
Rhodococcus_equi_103S 1
Nocardia_farcinica_IFM_10152 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_gilvum_PYR-GCK 1
Corynebacterium_variabile_DSM_44702 1
Kytococcus_sedentarius_DSM_20547 1
Rothia_mucilaginosa_DY-18 1
Rothia_dentocariosa_ATCC_17931 1
Renibacterium_salmoninarum_ATCC_33209 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Rhodothermus_marinus_DSM_4252 1
Tannerella_forsythia_ATCC_43037 1
Planctomyces_limnophilus_DSM_3776 1
Methylacidiphilum_infernorum_V4 1
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 1
Thermovibrio_ammonificans_HB-1 1
Desulfurobacterium_thermolithotrophum_DSM_11699 1
Sulfurihydrogenibium_sp._YO3AOP1 1
Sulfurihydrogenibium_azorense_Az-Fu1 1
Persephonella_marina_EX-H1 1
Hydrogenobaculum_sp._SN 1
Hydrogenobaculum_sp._HO 1
Hydrogenobaculum_sp._Y04AAS1 1
Aquifex_aeolicus_VF5 1
Leptotrichia_buccalis_C-1013-b 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfotalea_psychrophila_LSv54 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Sorangium_cellulosum_'So_ce_56' 1
Leptothrix_cholodnii_SP-6 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Verminephrobacter_eiseniae_EF01-2 1
Alicycliphilus_denitrificans_K601 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_ebreus_TPSY 1
Acidovorax_sp._KKS102 1
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 1
Herminiimonas_arsenicoxydans 1
Janthinobacterium_sp._Marseille 1
Nitrosomonas_sp._Is79A3 1
Nitrosomonas_eutropha_C91 1
Sphingobium_sp._SYK-6 1
Dinoroseobacter_shibae_DFL_12 1
Rhodospirillum_photometricum_DSM_122 1
Gluconacetobacter_xylinus_NBRC_3288 1
Rickettsia_felis_URRWXCal2 1
Parvibaculum_lavamentivorans_DS-1 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Vibrio_sp._Ex25 1
Shewanella_sp._MR-4 1
Marinobacter_sp._BSs20148 1
Alteromonas_sp._SN2 1
Halomonas_elongata_DSM_2581 1
Methylomicrobium_alcaliphilum 1
Methylomonas_methanica_MC09 1
Thioalkalivibrio_sp._K90mix 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1
Psychrobacter_sp._G 1
Psychrobacter_arcticus_273-4 1
Psychrobacter_cryohalolentis_K5 1
halophilic_archaeon_DL31 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloquadratum_walsbyi_DSM_16790 1
Halogeometricum_borinquense_DSM_11551 1
Haloferax_mediterranei_ATCC_33500 1
Haloferax_volcanii_DS2 1
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Cyanothece_sp._PCC_7425 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Gordonibacter_pamelaeae_7-10-1-b 1
Frankia_sp._EuI1c 1
Streptomyces_fulvissimus_DSM_40593 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Actinoplanes_friuliensis_DSM_7358 2
Corynebacterium_ulcerans_BR-AD22 1
Corynebacterium_ulcerans_809 1
Lactobacillus_helveticus_H10 1
Rhodothermus_marinus_SG0.5JP17-172 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Sorangium_cellulosum_So0157-2 1
Candidatus_Kinetoplastibacterium_desouzaii_TCC079E 1
Candidatus_Kinetoplastibacterium_crithidii_TCC036E 1
Pandoraea_pnomenusa_3kgm 1
Burkholderia_sp._YI23 1
Burkholderia_cenocepacia_AU_1054 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Alicycliphilus_denitrificans_BC 1
Acetobacter_pasteurianus_386B 1
Hyphomicrobium_denitrificans_1NES1 1
Bradyrhizobium_japonicum_USDA_6 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Thalassolituus_oleivorans_MIL-1 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Haloquadratum_walsbyi_C23 1
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 63
Uniprot_2018_03_genome 23100
NCBI_2017_08_genome 1961

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]