SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,56112,47473 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56112 - Protein kinase-like (PK-like)
47473 - EF-hand

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 23
Pinus_taeda   (Loblolly pine)   6
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   42
Theobroma_cacao_B97-61/B2_v1   (Cacao)   16
Gossypium_raimondii_v221 95
Citrus_clementina_v165 38
Citrus_sinensis_v154   (Sweet orange)   49
Thellungiella_halophila_v173 35
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   47
Capsella_rubella_v183 38
Arabidopsis_lyrata_   (Lyrate rockcress)   36
Arabidopsis_thaliana_10   (Thale cress)   46
Carica_papaya_   (Papaya)   19
Medicago_truncatula_   (Barrel medic)   37
Phaseolus_vulgaris_v186   (French bean)   33
Glycine_max_v109   (Soybean)   51
Cucumis_sativus_v122   (Cucumber)   30
Fragaria_vesca_   (Wild strawberry)   11
Malus_domestica_v196   (Apple)   27
Prunus_persica_v139   (Peach)   16
Linum_usitatissimum_v200   (Flax)   40
Manihot_esculenta_v147   (Cassava)   32
Populus_trichocarpa_v156   (Black cottonwood)   38
Vitis_vinifera_   (Wine grape)   11
Mimulus_guttatus_v140   (Spotted monkey flower)   30
Solanum_lycopersicum_v.2.3   (Tomato)   30
Solanum_tuberosum_   (Potato)   31
Actinidia_chinensis_Hongyang_ 14
Aquilegia_coerulea_v195 29
Triticum_urartu_22 10
Triticum_aestivum_22   (Bread wheat)   27
Aegilops_tauschii_22 10
Brachypodium_distachyon_   (Stiff brome)   42
Oryza_barthii_22   (African wild rice)   26
Oryza_meridionalis_22 41
Oryza_glumaepatula_22 33
Oryza_glaberrima   (African rice)   29
Oryza_punctata_22 48
Oryza_nivara_22 44
Oryza_brachyantha_22   (Malo sina)   22
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   44
Oryza_sativa_v193   (Rice)   44
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18
Panicum_virgatum_v202   (Switchgrass)   43
Setaria_italica_v164   (Foxtail millet)   38
Zea_mays_subsp._mays_   (Maize)   70
Zea_mays_v181   (Maize)   71
Sorghum_bicolor_   (Sorghum)   30
Musa_balbisiana   (Balbis banana)   33
Musa_acuminata_22   (Wild Malaysian banana)   29
Amborella_trichopoda_22 12
Physcomitrella_patens 22
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 5
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Bathycoccus_prasinos_ 2
Micromonas_pusilla_CCMP1545_v3.0 2
Porphyridium_purpureum_02_2012 3
Bigelowiella_natans_CCMP2755_22 6
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 4
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 2
Perkinsus_marinus_ATCC_50983_ 9
Paramecium_tetraurelia_ 101
Tetrahymena_thermophila_SB210_1_ 18
Ichthyophthirius_multifiliis_strain_G5_ 6
Cryptosporidium_hominis 2
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 3
Toxoplasma_gondii_VEG 5
Toxoplasma_gondii_ME49 4
Toxoplasma_gondii_GT1 5
Babesia_bovis_T2Bo_ 6
Theileria_parva__ 4
Theileria_annulata 4
Plasmodium_falciparum_3D7_ 5
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 4
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 4
Symbiodinium_minutum_clade_B1_v1.2 20
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 4

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   20
Hordeum_vulgare_22   (Domesticated barley)   16
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   27
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 5
Plasmodium_falciparum_Dd2_ 3

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   37

Others
Genome     Number
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 11
Malus_x_domestica_(Duplicate)   (Apple)   27
Ricinus_communis__(Early_assembly)   (Castor bean)   20
Nicotiana_benthamiana_0.4.4_(Early_draft) 47
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   29
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   30
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_2017_08_genome 3499
Uniprot_2018_03_genome 26208
TargetDB__(Targets) 19
Protozoadb_2010_08_(Protozoadb) 73
STRING_v9.0.5_(STRING) 320

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