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Domain combinations for _gap_,56399 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56399 - ADP-ribosylation

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   22
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   3
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   7
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   5
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   4
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5
Takifugu_rubripes_76_4   (Torafugu)   9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   11
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   7
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   8
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 52
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 4
Capitella_sp._I_ 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_brenneri_ 2
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Mnemiopsis_leidyi   (Sea walnut)   2
Acropora_digitifera_v1.0 13
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 1
Amphimedon_queenslandica 8
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 3
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 9
Serpula_lacrymans_var._lacrymans_S7.9_ 10
Coniophora_puteana 8
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 9
Laccaria_bicolor_S238N-H82_ 6
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 9
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 12
Tulasnella_calospora_AL13/4D_v1.0 22
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 5
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 2
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Yarrowia_lipolytica_CLIB122 0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 4
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 5
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 9
Pinus_taeda   (Loblolly pine)   10
Picea_abies   (Norway spruce)   7
Eucalyptus_grandis_v201   (Rose gum)   13
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7
Gossypium_raimondii_v221 24
Citrus_clementina_v165 11
Citrus_sinensis_v154   (Sweet orange)   5
Thellungiella_halophila_v173 10
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   14
Capsella_rubella_v183 10
Arabidopsis_lyrata_   (Lyrate rockcress)   11
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   13
Phaseolus_vulgaris_v186   (French bean)   8
Glycine_max_v109   (Soybean)   19
Cucumis_sativus_v122   (Cucumber)   10
Fragaria_vesca_   (Wild strawberry)   8
Malus_domestica_v196   (Apple)   17
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   11
Manihot_esculenta_v147   (Cassava)   11
Populus_trichocarpa_v156   (Black cottonwood)   14
Vitis_vinifera_   (Wine grape)   7
Mimulus_guttatus_v140   (Spotted monkey flower)   12
Solanum_lycopersicum_v.2.3   (Tomato)   9
Solanum_tuberosum_   (Potato)   12
Actinidia_chinensis_Hongyang_ 11
Aquilegia_coerulea_v195 9
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   11
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   10
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 9
Oryza_glumaepatula_22 9
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 9
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   13
Oryza_sativa_v193   (Rice)   13
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   13
Setaria_italica_v164   (Foxtail millet)   8
Zea_mays_subsp._mays_   (Maize)   15
Zea_mays_v181   (Maize)   18
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   20
Musa_acuminata_22   (Wild Malaysian banana)   23
Amborella_trichopoda_22 6
Physcomitrella_patens 2
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Micromonas_pusilla_CCMP1545_v3.0 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 5
Bigelowiella_natans_CCMP2755_22 5
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 19
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 4
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_infestans_T30-4_ 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 8
Tetrahymena_thermophila_SB210_1_ 20
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Theileria_parva__ 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 31
Naegleria_gruberi_ 14
Trichomonas_vaginalis_ 4
Guillardia_theta_CCMP2712_v1.0_ 9
Emiliania_huxleyi_CCMP1516_ 33
Leptolyngbya_sp._PCC_7376 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Streptosporangium_roseum_DSM_43021 2
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 2
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 0
Rhodococcus_jostii_RHA1 0
Nocardia_cyriacigeorgica_GUH-2 1
Mycobacterium_avium_104 1
Mycobacterium_marinum_M 1
Sanguibacter_keddieii_DSM_10542 0
Beutenbergia_cavernae_DSM_12333 1
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_radiodurans_R1 1
Ruminococcus_bromii 1
Syntrophobotulus_glycolicus_DSM_8271 1
Eubacterium_rectale_M104/1 1
Butyrivibrio_proteoclasticus_B316 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 2
Clostridium_cellulovorans_743B 1
Clostridium_acetobutylicum_ATCC_824 1
Lactobacillus_gasseri_ATCC_33323 2
Lactobacillus_brevis_ATCC_367 1
Streptococcus_equi_subsp._equi_4047 1
Streptococcus_mitis_B6 1
Paenibacillus_mucilaginosus_3016 1
Bacillus_halodurans_C-125 1
Chitinophaga_pinensis_DSM_2588 1
Flexibacter_litoralis_DSM_6794 0
Fibrella_aestuarina 1
Spirosoma_linguale_DSM_74 1
Flavobacterium_branchiophilum_FL-15 1
Candidatus_Protochlamydia_amoebophila_UWE25 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Myxococcus_fulvus_HW-1 1
Burkholderia_phytofirmans_PsJN 0
Burkholderia_xenovorans_LB400 0
Ralstonia_solanacearum_CFBP2957 2
Acidovorax_citrulli_AAC00-1 2
Bordetella_avium_197N 0
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 1
Bordetella_bronchiseptica_RB50 1
Nitrosomonas_eutropha_C91 1
Tistrella_mobilis_KA081020-065 0
Xanthobacter_autotrophicus_Py2 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_harveyi_ATCC_BAA-1116 0
Shewanella_halifaxensis_HAW-EB4 1
Alteromonas_sp._SN2 1
Marinomonas_mediterranea_MMB-1 1
Halomonas_elongata_DSM_2581 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Photorhabdus_asymbiotica 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_proteamaculans_568 1
Erwinia_tasmaniensis_Et1/99 4
Erwinia_sp._Ejp617 1
Erwinia_pyrifoliae_Ep1/96 3
Erwinia_amylovora_ATCC_49946 2
Salmonella_bongori_NCTC_12419 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Enterobacter_sp._R4-368 1
Citrobacter_rodentium_ICC168 1
Pseudomonas_sp._UW4 1
Pseudomonas_entomophila_L48 0
Pseudomonas_syringae_pv._tomato_str._DC3000 7
Pseudomonas_putida_F1 8
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_sp._VLB120 6
Methanocella_arvoryzae_MRE50 1
Methanobrevibacter_smithii_ATCC_35061 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Hordeum_vulgare_22   (Domesticated barley)   9
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Oscillatoria_nigro-viridis_PCC_7112 0
Streptomyces_albus_J1074 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_venezuelae_ATCC_10712 1
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 0
Rhodococcus_pyridinivorans_SB3094 1
Nocardia_brasiliensis_ATCC_700358 2
Candidatus_Arthromitus_sp._SFB-mouse-Yit 2
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_V583 2
Lactobacillus_reuteri_TD1 1
Lactobacillus_brevis_KB290 1
Streptococcus_equi_subsp._zooepidemicus 1
Streptococcus_pyogenes_HSC5 2
Streptococcus_pyogenes_MGAS10750 1
Streptococcus_pyogenes_MGAS10270 1
Streptococcus_pyogenes_MGAS9429 2
Streptococcus_pyogenes_MGAS6180 2
Streptococcus_pyogenes_NZ131 1
Streptococcus_pyogenes_MGAS10394 1
Streptococcus_pyogenes_M1_476 1
Listeria_monocytogenes_SLCC2479 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_FSL_R2-561 1
Listeria_monocytogenes_EGD-e 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Alistipes_shahii_WAL_8301 1
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Bdellovibrio_exovorus_JSS 2
Ralstonia_solanacearum_FQY_4 2
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 2
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_parapertussis_Bpp5 1
Bordetella_bronchiseptica_253 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Aeromonas_hydrophila_ML09-119 0
Vibrio_cholerae_O1_str._2010EL-1786 1
Thalassolituus_oleivorans_MIL-1 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 3
Yersinia_enterocolitica_subsp._palearctica_Y11 4
Erwinia_pyrifoliae_DSM_12163 3
Erwinia_amylovora_CFBP1430 2
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 2
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Escherichia_coli_Xuzhou21 1
Escherichia_coli_UMNK88 1
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_O26:H11_str._11368 1
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_O127:H6_str._E2348/69 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Enterobacter_cloacae_EcWSU1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 3
Pseudomonas_syringae_pv._syringae_B728a 7
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 9
Pseudomonas_putida_NBRC_14164 6
Pseudomonas_putida_DOT-T1E 5
Pseudomonas_putida_S16 2
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 3
Pseudomonas_putida_ND6 2
Pseudomonas_putida_KT2440 9
Pseudomonas_putida_GB-1 7
Pseudomonas_fluorescens_F113 7

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   5
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   4
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   4
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   6
Vicugna_pacos_69_1   (Alpaca)   3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   5
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   11
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   4
Arabidopsis_thaliana_10   (Thale cress)   9

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   25
Homo_sapiens__(NCBI_version)   (Human)   7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   17
Ricinus_communis__(Early_assembly)   (Castor bean)   6
Nicotiana_benthamiana_0.4.4_(Early_draft) 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 56
UniProt__viral_sequences_(Viral) 25
PDB_chains_(SCOP_1.75)_(PDB) 0
Protein_Data_Bank_(all_PDB_sequenc) 71
NCBI_viral_sequences_(Viral) 28
STRING_v9.0.5_(STRING) 361
Uniprot_2018_03_genome 18183
NCBI_2017_08_genome 14281
TargetDB__(Targets) 25
Protozoadb_2010_08_(Protozoadb) 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 45

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