SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,56487,49854,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56487 - SRCR-like
49854 - Spermadhesin, CUB domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Mus_musculus_76_38   (House mouse)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Ovis_aries_76_3.1   (Sheep)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   0

Longest transcript per gene
Genome     Number
Mus_musculus_69_38   (House mouse)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Anolis_carolinensis_69_2.0   (Green anole)   0

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 0
TargetDB__(Targets) 0
Uniprot_2018_03_genome 99
NCBI_2017_08_genome 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]