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  Home > SCOP hierarchy > Domain combination - _gap_,56496

Domain combinations for _gap_,56496 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56496 - Fibrinogen C-terminal domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   42
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_76_3.1   (Western gorilla)   19
Pongo_abelii_76_2   (Sumatran orangutan)   17
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   17
Papio_anubis_76   (Olive baboon)   17
Macaca_mulatta_76_1   (Rhesus monkey)   18
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   29
Otolemur_garnettii_76_3   (Small-eared galago)   17
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   14
Mus_musculus_76_38   (House mouse)   15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   13
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   12
Ochotona_princeps_76   (American pika)   12
Tupaia_belangeri_76   (Northern tree shrew)   8
Sus_scrofa_76_10.2   (Pig)   15
Bos_taurus_76_3.1   (Cattle)   15
Ovis_aries_76_3.1   (Sheep)   15
Vicugna_pacos_76_1   (Alpaca)   9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_76_1   (Giant panda)   16
Canis_familiaris_76_3.1   (Dog)   16
Felis_catus_76_6.2   (Domestic cat)   13
Equus_caballus_76_2   (Horse)   13
Myotis_lucifugus_76_2.0   (Little brown bat)   15
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   7
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   16
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   18
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   13
Macropus_eugenii_76_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   15
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_76_5   (Platypus)   12
Saccoglossus_kowalevskii_v3.0 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   17
Gallus_gallus_76_4   (Chicken)   15
Anas_platyrhynchos_76_1.0   (Mallard)   14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   26
Anolis_carolinensis_76_2.0   (Green anole)   18
Xenopus_laevis_   (African clawed frog)   45
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   39
Latimeria_chalumnae_76_1   (Coelacanth)   22
Lepisosteus_oculatus_76   (Spotted gar)   29
Gadus_morhua_76_1   (Atlantic cod)   18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   17
Takifugu_rubripes_76_4   (Torafugu)   57
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   29
Oryzias_latipes_76_1   (Japanese medaka)   19
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   20
Poecilia_formosa_76   (Amazon molly)   26
Oreochromis_niloticus_76_1.0   (Nile tilapia)   26
Astyanax_mexicanus_76   (Mexican tetra)   22
Danio_rerio_76_9   (Zebrafish)   30
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   15
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   20
Adineta_vaga 9
Octopus_bimaculoides_280 7
Crassostrea_gigas_22   (Pacific oyster)   50
Lottia_gigantea_   (Owl limpet)   21
Helobdella_robusta_ 24
Capitella_sp._I_ 22
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   13
Drosophila_grimshawi_1.3 20
Drosophila_willistoni_1.3 12
Drosophila_pseudoobscura_2.13 19
Drosophila_persimilis_1.3 14
Drosophila_suzukii 20
Drosophila_yakuba_1.3 9
Drosophila_simulans_1.3 11
Drosophila_sechellia_1.3 12
Drosophila_melanogaster_76_5   (Fruit fly)   17
Drosophila_erecta_1.3 12
Drosophila_ananassae_1.3 20
Drosophila_virilis_1.2 20
Drosophila_mojavensis_1.3 15
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   27
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   45
Anopheles_darlingi_22   (American malaria mosquito)   23
Anopheles_gambiae_49_3j   (African malaria mosquito)   32
Tribolium_castaneum_3.0   (Red flour beetle)   5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   14
Strigamia_maritima_22 6
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 0
Acropora_digitifera_v1.0 43
Nematostella_vectensis_1.0   (Starlet sea anemone)   12
Hydra_vulgaris 1
Amphimedon_queenslandica 82
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 0
Bathycoccus_prasinos_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Bigelowiella_natans_CCMP2755_22 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Phytophthora_infestans_T30-4_ 0
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 8
Guillardia_theta_CCMP2712_v1.0_ 0
Ilumatobacter_coccineus 0
Corynebacterium_aurimucosum_ATCC_700975 0
Arthrobacter_arilaitensis_Re117 0
Rothia_mucilaginosa_DY-18 0
Rothia_dentocariosa_ATCC_17931 0
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 0
Haliangium_ochraceum_DSM_14365 3
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 1
Marinomonas_mediterranea_MMB-1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   52
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   17
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   34
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Nonlabens_dokdonensis_DSW-6 1
Bdellovibrio_bacteriovorus_str._Tiberius 0
Sorangium_cellulosum_So0157-2 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   17
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   16
Pongo_abelii_69_2   (Sumatran orangutan)   16
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   17
Macaca_mulatta_69_1   (Rhesus monkey)   13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   17
Otolemur_garnettii_69_3   (Small-eared galago)   17
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   15
Mus_musculus_69_38   (House mouse)   14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   13
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   12
Ochotona_princeps_69   (American pika)   12
Tupaia_belangeri_69   (Northern tree shrew)   8
Sus_scrofa_69_10.2   (Pig)   15
Bos_taurus_69_3.1   (Cattle)   14
Vicugna_pacos_69_1   (Alpaca)   9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15
Ailuropoda_melanoleuca_69_1   (Giant panda)   16
Canis_familiaris_69_3.1   (Dog)   14
Felis_catus_69   (Domestic cat)   14
Equus_caballus_69_2   (Horse)   13
Myotis_lucifugus_69_2.0   (Little brown bat)   15
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   7
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   15
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   13
Macropus_eugenii_69_1.0   (Tammar wallaby)   10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   16
Ornithorhynchus_anatinus_69_5   (Platypus)   11
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   13
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   22
Anolis_carolinensis_69_2.0   (Green anole)   12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26
Latimeria_chalumnae_69_1   (Coelacanth)   19
Gadus_morhua_69_1   (Atlantic cod)   17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   16
Takifugu_rubripes_69_4   (Torafugu)   18
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18
Oryzias_latipes_69_1   (Japanese medaka)   16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   20
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20
Danio_rerio_69_9   (Zebrafish)   20
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   15
Drosophila_melanogaster_69_5   (Fruit fly)   11
Caenorhabditis_elegans_69_215   (Roundworm)   3

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   44
Homo_sapiens__(NCBI_version)   (Human)   27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
UniProt__viral_sequences_(Viral) 2
TargetDB__(Targets) 8
STRING_v9.0.5_(STRING) 768
Uniprot_2018_03_genome 18270
NCBI_2017_08_genome 8389
Protozoadb_2010_08_(Protozoadb) 2
NCBI_viral_sequences_(Viral) 11

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.